Factsheet for PGSC0003DMT400045314

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002100
PGSC0003DMT400045314
PGSC0003DMT400074878

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	PGSC0003DMT400002100	AT1G43700.1	15824315
AT1G43700.1	PGSC0003DMT400045314	AT1G43700.1	15824315
AT1G43700.1	PGSC0003DMT400074878	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060490.2.1	Tomato	nucleus	82.82	97.47
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	61.35	76.63
PGSC0003DMT400002100	Potato	nucleus	77.61	74.41
GSMUA_Achr3P19170_001	Banana	nucleus	35.58	58.0
VIT_18s0076g00330.t01	Wine grape	nucleus	59.51	55.43
TraesCS5B01G124200.1	Wheat	nucleus	46.93	54.64
CDY48943	Canola	nucleus	39.88	53.94
Bra034916.1-P	Field mustard	nucleus, plastid	42.02	52.09
KRH70316	Soybean	nucleus	51.84	51.21
Zm00001d041920_P001	Maize	nucleus	50.31	51.09
HORVU4Hr1G020540.1	Barley	nucleus	50.0	50.46
Os12t0162500-01	Rice	plasma membrane	50.61	50.3
EES08023	Sorghum	nucleus	52.15	50.0
Os11t0160500-01	Rice	nucleus, plasma membrane	36.2	50.0
GSMUA_Achr6P18130_001	Banana	nucleus	44.79	49.83
Zm00001d053162_P003	Maize	nucleus	51.53	49.7
TraesCS5A01G124600.1	Wheat	nucleus	50.61	49.7
TraesCS5D01G132300.1	Wheat	nucleus	50.31	49.4
TraesCS4D01G110900.1	Wheat	nucleus	49.69	49.09
EES15709	Sorghum	nucleus	52.45	49.0
TraesCS4B01G113400.1	Wheat	nucleus	49.39	48.94
Zm00001d004857_P001	Maize	nucleus	52.45	48.86
TraesCS4A01G209900.1	Wheat	nucleus	49.39	48.64
CDX80722	Canola	nucleus	47.85	48.45
AT1G43700.1	Thale cress	nucleus	50.0	47.8
Bra032191.1-P	Field mustard	nucleus	48.16	47.58
CDY30752	Canola	nucleus	48.16	47.58
GSMUA_Achr10P...	Banana	nucleus	45.4	47.28
HORVU5Hr1G039870.5	Barley	nucleus, plastid	50.0	45.66
GSMUA_Achr6P13040_001	Banana	nucleus	38.34	44.01
CDY71925	Canola	nucleus	34.05	43.7
GSMUA_Achr10P...	Banana	nucleus	43.56	42.26
Zm00001d023507_P001	Maize	nucleus, plastid	50.61	41.46
PGSC0003DMT400042946	Potato	plastid	38.65	38.89
KRH08713	Soybean	nucleus	48.16	36.85
PGSC0003DMT400070968	Potato	nucleus	38.04	35.53
PGSC0003DMT400009538	Potato	nucleus	32.52	23.87
PGSC0003DMT400024289	Potato	nucleus	20.86	22.44
PGSC0003DMT400032381	Potato	nucleus, plastid	19.63	22.15
PGSC0003DMT400004178	Potato	nucleus	37.42	21.14
PGSC0003DMT400020206	Potato	nucleus	19.33	20.66
PGSC0003DMT400005064	Potato	nucleus	15.64	16.67
PGSC0003DMT400024003	Potato	nucleus	16.56	15.56
PGSC0003DMT400064169	Potato	nucleus	16.87	15.07

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102597510	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M1BHG2	PFAM:PF00170
EnsemblPlantsGene:PGSC0003DMG400017577	PGSC:PGSC0003DMG400017577	EnsemblPlants:PGSC0003DMT400045314	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000296438B	RefSeq:XP_006363906.1	InterPro:bZIP	SEG:seg

Description

BZIP transcriptional activator [Source:PGSC_GENE;Acc:PGSC0003DMG400017577]

Coordinates

chr6:-:43451328..43458453

Molecular Weight (calculated)

36324.4 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.838

Length

326 amino acids

Sequence
(BLAST)

001: MDPKFAGKPI QAQFYSGQTD LDQMQDTPTR GARHRRAQSE TFFRFPSFDD DMLLDDVVSD FSLDVQAPTL MQPANSPDSS STGPALSAGP SDNPKPLAHY
101: RSLSVDADFF DGLDFGGVPT EKKMMGSEPR HRHSNSMDGS FDTSSFESES LSVKKAMAPD RLAELSLIDP KRAKRILANR QSAARSKERK TRYTSELERK
201: VQTLQTEATT LSAQITVLQR DTSGLNAENK ELKFRLQALE QQAHLRDALN DTLREELQRL KIEAGQLPSA NGNRGMRPHL PPQPQSFVQC GNLHAQHQQP
301: HIPRSPASNQ NVSGQSQNSF FNFNRA

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.