Factsheet for PGSC0003DMT400024003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g020950.1.1	Tomato	nucleus	90.78	96.63
VIT_18s0001g03010.t01	Wine grape	nucleus	37.75	48.16
PGSC0003DMT400064169	Potato	nucleus	48.7	46.3
GSMUA_Achr8P29390_001	Banana	nucleus	43.23	40.98
GSMUA_Achr9P00300_001	Banana	nucleus	42.94	39.63
Zm00001d041831_P001	Maize	mitochondrion	39.48	39.37
KXG23197	Sorghum	mitochondrion	40.35	38.78
Os11t0218000-01	Rice	nucleus	40.63	38.74
Zm00001d049135_P001	Maize	mitochondrion	38.9	38.68
KXG28232	Sorghum	mitochondrion	39.77	38.55
TraesCS4B01G108000.1	Wheat	nucleus	38.33	38.44
TraesCS4A01G204300.1	Wheat	nucleus	38.33	38.44
TraesCS4D01G105100.1	Wheat	mitochondrion	38.04	38.15
AT1G35490.1	Thale cress	nucleus	32.56	37.67
Os12t0194600-01	Rice	nucleus	39.19	36.86
CDY48939	Canola	nucleus	32.56	36.57
GSMUA_Achr3P02820_001	Banana	golgi	40.92	35.41
HORVU5Hr1G031130.2	Barley	mitochondrion	36.6	35.28
CDX80717	Canola	nucleus, plastid	31.7	34.38
Bra034913.1-P	Field mustard	nucleus	21.33	33.33
HORVU4Hr1G016340.4	Barley	nucleus, plastid	38.62	32.52
Zm00001d035240_P001	Maize	nucleus	19.31	29.65
PGSC0003DMT400024289	Potato	nucleus	22.48	25.74
PGSC0003DMT400005064	Potato	nucleus	22.48	25.49
PGSC0003DMT400032381	Potato	nucleus, plastid	19.88	23.88
PGSC0003DMT400020206	Potato	nucleus	20.46	23.28
PGSC0003DMT400042946	Potato	plastid	17.87	19.14
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	14.12	18.77
PGSC0003DMT400002100	Potato	nucleus	17.0	17.35
PGSC0003DMT400070968	Potato	nucleus	17.29	17.19
PGSC0003DMT400045314	Potato	nucleus	15.56	16.56
PGSC0003DMT400009538	Potato	nucleus	17.58	13.74
PGSC0003DMT400004178	Potato	nucleus	20.75	12.48

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102598733	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M1AJA3	EnsemblPlantsGene:PGSC0003DMG400009283	PGSC:PGSC0003DMG400009283	EnsemblPlants:PGSC0003DMT400024003	PANTHER:PTHR13301
PANTHER:PTHR13301:SF25	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000294DC25	RefSeq:XP_006350327.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

Transcription factor RF2a [Source:PGSC_GENE;Acc:PGSC0003DMG400009283]

Coordinates

chr11:-:14371362..14374202

Molecular Weight (calculated)

39527.8 Da

IEP (calculated)

9.243

GRAVY (calculated)

-1.098

Length

347 amino acids

Sequence
(BLAST)

001: MESLNGSSSL KNFSFSNKQS IMDSTSPFLQ SYVDSNMDGS KGKAKPTEGS SHHHRCNSES FLIEEQPSWL DDLLNEPPET TTVVHKGHRR SASDTFAYLG
101: AAAERLNTWE EPKNKNVNIG ASWGSVNYVS YKDLSAVPYE TKPNSSHEQK FNKAAQELNG APSVSHEKHN MREINNSKNQ EGSSERSNNA QAKHSMSKAD
201: AKRAKQQSAH RSRVRKLQHI AELERTVQAL QAEGSELSAE LEFVDQQNII LSMENRALRQ RLDSLSQEQL IKHLEQEMLE RELTRLQTMY QMQRQQMQQQ
301: HQQPQQQNHS KHRRNKSRDL EAQFANLSIK NNEANSSRVQ VTGSVRM

Best Arabidopsis Sequence Match ( AT1G58110.1 )
(BLAST)

001: MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYSEYIP TGLIGSRHGQ KLSNEKTHHQ RTSSESHLVE ELPFWLDDLL NEQPESPARK CGHRRSSSDS
101: YAYLDVANAT NISLTLQNDF SYRNTVLSTQ RGVQELDRNK NAQDAAFYSG ASFLKQKSRQ RDSLVATGAC PSWLPFAREN GGGKNLGALY MSQDATVISS
201: ERKNYAEPFS HDPKMLSSEE NNSNPSPVTY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ RNLILSMENK ALKKRLESIA
301: QEKLIKQLEQ EVLEKEIGRL RALYQQQQQT QKPSASRGRA TSKDLDSQFS SLSLNTKDSN CRRDSVSVMG QFHF

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4I9R1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.