Factsheet for PGSC0003DMT400070968

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g048630.2.1	Tomato	nucleus	98.57	98.57
PGSC0003DMT400042946	Potato	plastid	75.64	81.48
VIT_13s0067g02900.t01	Wine grape	nucleus	71.35	69.36
Bra016980.1-P	Field mustard	nucleus	57.31	58.48
CDX93167	Canola	nucleus	57.02	58.02
CDY06974	Canola	nucleus	58.17	57.67
Bra004582.1-P	Field mustard	nucleus	57.59	56.46
CDX79976	Canola	nucleus	57.59	56.46
CDY23889	Canola	nucleus	57.31	56.34
AT2G40620.1	Thale cress	nucleus	58.74	55.86
KRH53733	Soybean	nucleus	25.5	50.57
KRH64202	Soybean	nucleus	42.69	50.34
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	32.09	42.91
PGSC0003DMT400045314	Potato	nucleus	35.53	38.04
PGSC0003DMT400002100	Potato	nucleus	36.1	37.06
PGSC0003DMT400009538	Potato	nucleus	37.82	29.73
PGSC0003DMT400004178	Potato	nucleus	41.26	24.96
PGSC0003DMT400024289	Potato	nucleus	20.92	24.09
PGSC0003DMT400020206	Potato	nucleus	20.63	23.61
PGSC0003DMT400032381	Potato	nucleus, plastid	19.2	23.18
PGSC0003DMT400024003	Potato	nucleus	17.19	17.29
PGSC0003DMT400064169	Potato	nucleus	16.62	15.89
PGSC0003DMT400005064	Potato	nucleus	12.61	14.38

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102582552	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M1CN16	PFAM:PF00170
EnsemblPlantsGene:PGSC0003DMG400027599	PGSC:PGSC0003DMG400027599	EnsemblPlants:PGSC0003DMT400070968	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF103
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000294ECEA	RefSeq:XP_006357296.1	InterPro:bZIP	SEG:seg

Description

Transcription factor RF2b [Source:PGSC_GENE;Acc:PGSC0003DMG400027599]

Coordinates

chr6:+:34887426..34893807

Molecular Weight (calculated)

38777.1 Da

IEP (calculated)

6.294

GRAVY (calculated)

-0.766

Length

349 amino acids

Sequence
(BLAST)

001: MQDPSNPNSK QLNQTPPFSA TFRPSHHRRA HSEVNFRLPE DLDLVSDPFD ASAGSFEEIG SEDDFFSTYM DIEKLGSGSN PTDVPGFNNA GAGSSGLVAD
101: CGDGERNFTR PRHRHSNSVD SSSLLLSESI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SASRSKERKA RYITELERKV QTLQTEATTL SAQLTLFQRD
201: TTQFTNENTE LKLRLQAMAQ QAQLRDALNE ALKQEVERLK MATGEMSSSD AYNLGMQHIP YNQSAFFSHQ PQSGPSESQN IQMQQFHSLQ DSLLNPHRRL
301: LAGHGQVLQD TMQQDPLGRF QGLDIGGRGM HLVKTETPSI SASESSSTL

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.