Factsheet for PGSC0003DMT400074878

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002100
PGSC0003DMT400045314
PGSC0003DMT400074878

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	PGSC0003DMT400002100	AT1G43700.1	15824315
AT1G43700.1	PGSC0003DMT400045314	AT1G43700.1	15824315
AT1G43700.1	PGSC0003DMT400074878	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071160.2.1	Tomato	nucleus	98.47	75.37
PGSC0003DMT400002100	Potato	nucleus	97.7	75.0
PGSC0003DMT400045314	Potato	nucleus	76.63	61.35
CDY48943	Canola	nucleus	52.11	56.43
GSMUA_Achr3P19170_001	Banana	nucleus	41.76	54.5
Bra034916.1-P	Field mustard	nucleus, plastid	53.64	53.23
VIT_18s0076g00330.t01	Wine grape	nucleus	65.52	48.86
TraesCS5B01G124200.1	Wheat	nucleus	48.66	45.36
KRH70316	Soybean	nucleus	56.32	44.55
CDX80722	Canola	nucleus	54.41	44.1
CDY30752	Canola	nucleus	55.56	43.94
Bra032191.1-P	Field mustard	nucleus	55.56	43.94
AT1G43700.1	Thale cress	nucleus	56.7	43.4
Os12t0162500-01	Rice	plasma membrane	54.02	42.99
Zm00001d041920_P001	Maize	nucleus	52.11	42.37
TraesCS5A01G124600.1	Wheat	nucleus	53.64	42.17
EES08023	Sorghum	nucleus	54.79	42.06
Zm00001d053162_P003	Maize	nucleus	54.41	42.01
TraesCS5D01G132300.1	Wheat	nucleus	52.87	41.57
EES15709	Sorghum	nucleus	55.56	41.55
HORVU4Hr1G020540.1	Barley	nucleus	51.34	41.49
Zm00001d004857_P001	Maize	nucleus	55.17	41.14
GSMUA_Achr6P18130_001	Banana	nucleus	45.98	40.96
TraesCS4B01G113400.1	Wheat	nucleus	50.96	40.43
TraesCS4D01G110900.1	Wheat	nucleus	50.96	40.3
TraesCS4A01G209900.1	Wheat	nucleus	50.57	39.88
GSMUA_Achr10P...	Banana	nucleus	47.51	39.62
Os11t0160500-01	Rice	nucleus, plasma membrane	35.25	38.98
HORVU5Hr1G039870.5	Barley	nucleus, plastid	51.72	37.82
GSMUA_Achr6P13040_001	Banana	nucleus	40.61	37.32
CDY71925	Canola	nucleus	35.63	36.61
Zm00001d023507_P001	Maize	nucleus, plastid	55.17	36.18
GSMUA_Achr10P...	Banana	nucleus	45.59	35.42
PGSC0003DMT400042946	Potato	plastid	42.91	34.57
KRH08713	Soybean	nucleus	52.49	32.16
PGSC0003DMT400070968	Potato	nucleus	42.91	32.09
PGSC0003DMT400009538	Potato	nucleus	36.02	21.17
PGSC0003DMT400032381	Potato	nucleus, plastid	21.84	19.72
PGSC0003DMT400024289	Potato	nucleus	22.22	19.14
PGSC0003DMT400004178	Potato	nucleus	41.0	18.54
PGSC0003DMT400020206	Potato	nucleus	21.07	18.03
PGSC0003DMT400024003	Potato	nucleus	18.77	14.12
PGSC0003DMT400064169	Potato	nucleus	17.62	12.6
PGSC0003DMT400005064	Potato	nucleus	14.56	12.42

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M1CUA7	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG400029118
PGSC:PGSC0003DMG400029118	EnsemblPlants:PGSC0003DMT400074878	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002950CA1	InterPro:bZIP	SEG:seg	:	:

Description

BZIP transcriptional activator RSG [Source:PGSC_GENE;Acc:PGSC0003DMG400029118]

Coordinates

chr4:+:59452426..59459127

Molecular Weight (calculated)

28677.5 Da

IEP (calculated)

10.097

GRAVY (calculated)

-0.872

Length

261 amino acids

Sequence
(BLAST)

001: MQPANSADSS SNGPGADHNP RPLNHFRSLS VDADFFDGLE FGEAGATTPA ASEEKKMLGS GSGYRHRHSN SMDGSFSAAS FEAESSVKKA MAPDRLAELA
101: LIDPKRAKRI LANRQSAARS KERKIRYTSE LERKVQTLQS EATTLSAQIM VLQRDNSGLT TENKELKLRL QALEQQAHLR DALNEALREE LQRLKITAGQ
201: MSAANGSRGP RPHFPPQPQS FVQCGNHHTQ QQQPHMPQST TSTQNIGGQT QPSFMNFNNR G

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.