Factsheet for PGSC0003DMT400020206

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002100
PGSC0003DMT400003516
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400020206
PGSC0003DMT400024289
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400045314
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400074878
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	PGSC0003DMT400002100	AT1G43700.1	17719007
AT3G58120.1	PGSC0003DMT400045314	AT1G43700.1	17719007
AT3G58120.1	PGSC0003DMT400074878	AT1G43700.1	17719007
AT3G58120.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT3G58120.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT3G58120.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT3G58120.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT3G58120.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT3G58120.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT3G58120.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT3G58120.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT3G58120.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT3G58120.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT3G58120.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT3G58120.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT3G58120.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT3G58120.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT3G58120.1	PGSC0003DMT400020206	AT3G58120.1	17719007
AT3G58120.1	PGSC0003DMT400024289	AT3G58120.1	17719007
AT3G58120.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT3G58120.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT3G58120.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT3G58120.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT3G58120.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT3G58120.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT3G58120.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT3G58120.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT3G58120.1	PGSC0003DMT400097662	AT5G21274.1	17360592
AT3G58120.1	PGSC0003DMT400003516	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010800.1.1	Tomato	nucleus	96.07	95.75
PGSC0003DMT400024289	Potato	nucleus	60.0	60.4
CDX71974	Canola	nucleus, plastid	51.15	58.43
CDY06053	Canola	nucleus	53.11	57.04
CDY64520	Canola	nucleus, plastid	50.49	56.41
CDY22561	Canola	nucleus, plastid	49.51	56.34
CDY35379	Canola	nucleus, plastid	49.18	55.97
KRH22317	Soybean	nucleus	57.05	55.95
CDX71000	Canola	nucleus, plastid	50.82	55.56
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	53.44	55.25
CDY56238	Canola	extracellular	24.26	55.22
CDX79872	Canola	nucleus, plastid	50.16	54.64
KRH27013	Soybean	nucleus	57.05	54.38
CDX98266	Canola	nucleus, plastid	52.13	53.36
Bra003320.1-P	Field mustard	nucleus	52.46	52.63
Bra004689.1-P	Field mustard	nucleus, plastid	52.79	52.61
AT3G58120.1	Thale cress	nucleus	55.41	51.37
KRH25692	Soybean	nucleus, plastid	55.41	51.21
Bra007380.1-P	Field mustard	nucleus	53.11	50.94
PGSC0003DMT400032381	Potato	nucleus, plastid	48.2	50.87
AT2G42380.2	Thale cress	nucleus, plastid	53.44	50.78
KRH55826	Soybean	nucleus, plastid	56.39	50.59
Bra000256.1-P	Field mustard	nucleus, plastid	47.87	40.33
PGSC0003DMT400064169	Potato	nucleus	29.51	24.66
PGSC0003DMT400005064	Potato	nucleus	22.95	22.88
PGSC0003DMT400042946	Potato	plastid	23.28	21.91
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	18.03	21.07
PGSC0003DMT400070968	Potato	nucleus	23.61	20.63
PGSC0003DMT400024003	Potato	nucleus	23.28	20.46
PGSC0003DMT400045314	Potato	nucleus	20.66	19.33
PGSC0003DMT400002100	Potato	nucleus	21.31	19.12
PGSC0003DMT400009538	Potato	nucleus	25.25	17.34
PGSC0003DMT400004178	Potato	nucleus	25.9	13.69

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102603174	MapMan:15.5.4.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M1AD36	PFAM:PF00170	EnsemblPlantsGene:PGSC0003DMG401007810
PGSC:PGSC0003DMG401007810	EnsemblPlants:PGSC0003DMT400020206	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR13301	PANTHER:PTHR13301:SF134
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002959A17	RefSeq:XP_006350039.1	InterPro:bZIP	SEG:seg

Description

Transcription factor RF2a [Source:PGSC_GENE;Acc:PGSC0003DMG401007810]

Coordinates

chr12:+:1559538..1561835

Molecular Weight (calculated)

34838.9 Da

IEP (calculated)

5.439

GRAVY (calculated)

-0.822

Length

305 amino acids

Sequence
(BLAST)

001: MAHLPPRAPN MTQNWPDFSL HQKMENLAPS AHSLWADEFL DMSSRRGSHR RSMSDSIAFL ESPMVEECRR LSSTTPGSGG TTNGHEEFER FEDEQQIMSM
101: FNDDVHDMSC SNPSSPSDYI NVNEDKKMSG PDQMMMQLKS DQNEEVESSC KTNEELAIAN QNASTNNIEY SSERVVDPKR IKRILANRQS AQRSRVRKLQ
201: YVSELERSVS TLQAEVSVLS PRVAFLDHQR LLLNVDNSAL RQKIAALAQD KLFKDAHQEA LKMEIERLRQ IYYQQNMKQQ MDNNTTPLAD STNTPPEIKV
301: QLSVN

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.