CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG93749
KRG94975
KRH01443
KRH08713
KRH18312
KRH18664
KRH22317
KRH25692
KRH27013
KRH31638
KRH45160
KRH55826
KRH69070
KRH70316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	KRH08713	AT1G43700.1	17719007
AT3G58120.1	KRH70316	AT1G43700.1	17719007
AT3G58120.1	KRG89812	AT2G41090.1	17360592
AT3G58120.1	KRG94975	AT2G41090.1	17360592
AT3G58120.1	KRH18664	AT2G41090.1	17360592
AT3G58120.1	KRG89812	AT2G41100.1	17360592
AT3G58120.1	KRG94975	AT2G41100.1	17360592
AT3G58120.1	KRH18664	AT2G41100.1	17360592
AT3G58120.1	KRH22317	AT3G58120.1	17719007
AT3G58120.1	KRH25692	AT3G58120.1	17719007
AT3G58120.1	KRH27013	AT3G58120.1	17719007
AT3G58120.1	KRH55826	AT3G58120.1	17719007
AT3G58120.1	KRH31638	AT4G14640.1	17360592
AT3G58120.1	KRH69070	AT4G14640.1	17360592
AT3G58120.1	KRG89812	AT5G21274.1	17360592
AT3G58120.1	KRG94975	AT5G21274.1	17360592
AT3G58120.1	KRH18664	AT5G21274.1	17360592
AT3G58120.1	KRG93749	AT5G38800.1	17719007
AT3G58120.1	KRH01443	AT5G38800.1	17719007
AT3G58120.1	KRH18312	AT5G38800.1	17719007
AT3G58120.1	KRH45160	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22317	Soybean	nucleus	91.56	94.21
CDY56238	Canola	extracellular	29.69	70.9
KRH25692	Soybean	nucleus, plastid	70.62	68.48
KRH55826	Soybean	nucleus, plastid	71.25	67.06
CDX71000	Canola	nucleus, plastid	58.12	66.67
CDX71974	Canola	nucleus, plastid	55.62	66.67
CDY06053	Canola	nucleus	59.06	66.55
CDY35379	Canola	nucleus, plastid	55.62	66.42
CDY64520	Canola	nucleus, plastid	56.56	66.3
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	60.94	66.1
CDX79872	Canola	nucleus, plastid	57.81	66.07
CDY22561	Canola	nucleus, plastid	55.31	66.04
CDX98266	Canola	nucleus, plastid	59.69	64.09
Bra004689.1-P	Field mustard	nucleus, plastid	60.94	63.73
PGSC0003DMT400024289	Potato	nucleus	59.06	62.38
Bra003320.1-P	Field mustard	nucleus	59.06	62.17
AT2G42380.2	Thale cress	nucleus, plastid	60.94	60.75
AT3G58120.1	Thale cress	nucleus	62.19	60.49
Bra007380.1-P	Field mustard	nucleus	59.06	59.43
Solyc07g053450.2.1	Tomato	nucleus	51.56	58.1
KRH27307	Soybean	plastid	51.25	57.54
Solyc12g010800.1.1	Tomato	nucleus	54.69	57.19
PGSC0003DMT400020206	Potato	nucleus	54.38	57.05
KRH22014	Soybean	nucleus, plastid	55.31	55.31
Bra000256.1-P	Field mustard	nucleus, plastid	54.69	48.34
KRH43037	Soybean	nucleus	30.62	26.06
KRH59143	Soybean	nucleus	30.31	25.87
KRH72827	Soybean	plastid	24.06	21.15
KRH70316	Soybean	nucleus	21.56	20.91
KRH17183	Soybean	plastid	23.44	20.72
KRH64202	Soybean	nucleus	18.75	20.27
KRH30482	Soybean	nucleus	22.5	18.7
KRG98137	Soybean	nucleus	22.19	18.68
KRH10117	Soybean	nucleus	23.12	17.62
KRH23219	Soybean	nucleus	23.12	17.29
KRH29611	Soybean	nucleus	20.31	16.88
KRH35159	Soybean	nucleus	16.56	16.72
KRH24606	Soybean	nucleus	20.62	16.62
KRH53733	Soybean	nucleus	9.06	16.48
KRH08713	Soybean	nucleus	20.31	15.26
KRH61066	Soybean	nucleus, plastid	24.06	15.01
KRH17396	Soybean	nucleus	25.62	14.67
KRH05913	Soybean	nucleus	25.31	14.65
KRH24356	Soybean	nucleus	24.06	14.05
KRH29330	Soybean	nucleus	23.75	13.64
KRH51734	Soybean	nucleus	14.06	11.22

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100101874	MapMan:15.5.4.1	EMBL:ACUP02007760	EMBL:BT096900	UniProt:C6TGZ0
ncoils:Coil	EnsemblPlantsGene:GLYMA_12G208400	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045893	InterPro:IPR004827	EnsemblPlants:KRH27013	ProteinID:KRH27013	ProteinID:KRH27013.1	PFAM:PF07716
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR13301	PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0001B16D6A	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:36772916..36777452

Molecular Weight (calculated)

36642.7 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.962

Length

320 amino acids

Sequence
(BLAST)

001: MAQLPPKIPN MSPSWPDFSS HQQKMQLPPL NNNGTITNNY HQHNQNPSWV DEFLDFSSAR RGVHRRSVSD SITYLDSPVK CGGNKNNNNN ENEFDKFDDE
101: QFMSMFTDEV VLSGVPLPPP TTLSSSNPSS PYDQNFINDE KEKKEEEEEH HHHHQLKNEA DEVESQCKQE IMQLPNDTNT CSSSERITDP KRVKRILANR
201: QSAQRSRVRK LQYISELERS VTSLQAEVSV LSPRVAFLDH QRLLLNVDNS ALKQRIAALA QDKIFKDAHQ EALKREIERL RQVYYQQSLK KMENAAGSPL
301: PSPKPICDAQ TEKEAQLLNA

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.