Factsheet for VIT_12s0028g02590.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_12s0028g02590.t01
VIT_14s0083g00700.t01
VIT_18s0076g00330.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	VIT_18s0076g00330.t01	AT1G43700.1	17719007
AT3G58120.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT3G58120.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT3G58120.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT3G58120.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT3G58120.1	VIT_12s0028g02590.t01	AT3G58120.1	17719007
AT3G58120.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT3G58120.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT3G58120.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT3G58120.1	VIT_14s0083g00700.t01	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22317	Soybean	nucleus	67.12	63.67
CDY56238	Canola	extracellular	28.81	63.43
CDY06053	Canola	nucleus	60.34	62.68
PGSC0003DMT400024289	Potato	nucleus	64.07	62.38
CDX71974	Canola	nucleus, plastid	55.93	61.8
CDY22561	Canola	nucleus, plastid	55.59	61.19
KRH27013	Soybean	nucleus	66.1	60.94
CDY35379	Canola	nucleus, plastid	55.25	60.82
VIT_19s0014g01780.t01	Wine grape	nucleus	63.39	60.52
CDX79872	Canola	nucleus, plastid	57.29	60.36
CDX71000	Canola	nucleus, plastid	56.95	60.22
CDY64520	Canola	nucleus, plastid	55.59	60.07
Solyc07g053450.2.1	Tomato	nucleus	57.63	59.86
CDX98266	Canola	nucleus, plastid	60.0	59.4
KRH25692	Soybean	nucleus, plastid	66.44	59.39
Bra004689.1-P	Field mustard	nucleus, plastid	61.02	58.82
KRH55826	Soybean	nucleus, plastid	67.12	58.24
Bra003320.1-P	Field mustard	nucleus	60.0	58.22
AT3G58120.1	Thale cress	nucleus	64.41	57.75
Bra007380.1-P	Field mustard	nucleus	61.69	57.23
AT2G42380.2	Thale cress	nucleus, plastid	61.69	56.7
Solyc12g010800.1.1	Tomato	nucleus	55.93	53.92
PGSC0003DMT400020206	Potato	nucleus	55.25	53.44
Bra000256.1-P	Field mustard	nucleus, plastid	56.61	46.13
VIT_18s0001g13740.t01	Wine grape	nucleus	16.27	36.36
VIT_18s0001g03010.t01	Wine grape	nucleus	22.71	24.63
VIT_12s0035g00620.t01	Wine grape	nucleus	30.51	24.06
VIT_13s0073g00430.t01	Wine grape	nucleus	24.41	23.38
VIT_06s0004g08070.t01	Wine grape	plastid	23.73	20.47
VIT_18s0076g00330.t01	Wine grape	nucleus	23.73	20.0
VIT_13s0067g02900.t01	Wine grape	nucleus	23.05	18.94
VIT_05s0102g01120.t01	Wine grape	nucleus	25.42	17.65
VIT_03s0038g00860.t01	Wine grape	nucleus	27.46	11.98

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100243740	wikigene:100243740	MapMan:15.5.4.1	EMBL:AM477156	ProteinID:CAN81664
ProteinID:CAN81664.1	ProteinID:CBI21942	ProteinID:CBI21942.3	ncoils:Coil	UniProt:E0CTM6	EMBL:FN595235
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045893	InterPro:IPR004827
EntrezGene:LOC100243740	wikigene:LOC100243740	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR13301
PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00015C953C	ArrayExpress:VIT_12s0028g02590	EnsemblPlantsGene:VIT_12s0028g02590
EnsemblPlants:VIT_12s0028g02590.t01	RefSeq:XP_002275912	RefSeq:XP_002275912.1	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:3366293..3367561

Molecular Weight (calculated)

33261.7 Da

IEP (calculated)

6.408

GRAVY (calculated)

-0.832

Length

295 amino acids

Sequence
(BLAST)

001: MAQLPPKVPA MAANWPSFPH QKIPSMGNLA PPATQNPSWV DEFLDFSSAK RGTHRRSVSD SIAFFEAPDD CRNSGAAPRP PGAGNEFDQF DDEQFMSMFT
101: DAMAPTISSS NPSTPSDHYS FNEEKTTTIE QQQQQQQLKN ESEEVQSSCK LESQTPPQPS MTTSNDRIVD PKRVKRILAN RQSAQRSRVR KLQYISELER
201: SVTSLQTEVS VLSPRVAFLD HQRLLLNVDN SALKQRIAAL AQDKIFKDAH QDALKREIER LRQVYHQQNL KTTENAAPPT ASDVKDFKEE DVLNH

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.