Factsheet for VIT_05s0102g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10117	Soybean	nucleus	74.12	75.0
Bra030637.1-P	Field mustard	nucleus	64.94	72.44
KRH23219	Soybean	nucleus	72.94	72.43
Solyc06g053350.2.1	Tomato	plastid	73.88	72.35
CDY15560	Canola	nucleus	64.24	71.65
CDX86537	Canola	nucleus	64.47	69.72
CDY10170	Canola	nucleus	62.82	67.94
Bra015471.1-P	Field mustard	nucleus	62.35	67.6
CDY47713	Canola	nucleus	62.35	67.6
AT2G31370.6	Thale cress	nucleus	63.29	67.59
AT1G06070.1	Thale cress	nucleus	67.06	67.38
CDY10799	Canola	nucleus	58.59	67.12
Bra018250.1-P	Field mustard	nucleus	58.82	66.84
CDY19094	Canola	nucleus	49.65	66.35
CDY56611	Canola	nucleus	57.18	66.03
CDY15381	Canola	nucleus	57.41	65.95
Bra021735.1-P	Field mustard	nucleus	49.41	61.95
GSMUA_Achr11P...	Banana	nucleus	52.94	60.16
GSMUA_Achr5P25700_001	Banana	nucleus	49.18	58.87
GSMUA_AchrUn_...	Banana	nucleus	54.59	58.15
Zm00001d021189_P001	Maize	nucleus	50.59	58.11
Zm00001d006127_P003	Maize	nucleus	50.35	57.68
Os09t0516200-01	Rice	nucleus	51.29	57.37
TraesCS5D01G308600.1	Wheat	nucleus	50.35	56.91
EER99183	Sorghum	nucleus	52.24	56.63
TraesCS5B01G301900.1	Wheat	nucleus	50.12	56.5
TraesCS5A01G299400.1	Wheat	nucleus	49.88	56.23
GSMUA_Achr11P...	Banana	nucleus	57.65	54.69
VIT_18s0001g13740.t01	Wine grape	nucleus	16.94	54.55
HORVU7Hr1G056230.2	Barley	nucleus	45.18	52.6
TraesCS7B01G166100.1	Wheat	nucleus	44.94	51.62
TraesCS7A01G266400.1	Wheat	nucleus	44.24	51.51
Zm00001d031697_P001	Maize	nucleus	30.12	51.41
EES14151	Sorghum	nucleus	45.41	50.52
TraesCS7D01G268400.1	Wheat	nucleus	43.29	50.0
TraesCS2A01G352100.1	Wheat	nucleus	43.76	49.87
HORVU5Hr1G079160.11	Barley	vacuole	51.06	48.76
Zm00001d052717_P001	Maize	nucleus	43.53	48.3
EES12438	Sorghum	nucleus	42.82	48.15
Zm00001d003180_P001	Maize	nucleus	41.41	47.7
HORVU2Hr1G085560.4	Barley	nucleus, plastid	42.82	47.15
VIT_06s0004g08070.t01	Wine grape	plastid	33.65	41.81
VIT_18s0076g00330.t01	Wine grape	nucleus	34.12	41.43
VIT_13s0067g02900.t01	Wine grape	nucleus	33.65	39.83
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	17.65	25.42
VIT_03s0038g00860.t01	Wine grape	nucleus	37.88	23.82
VIT_19s0014g01780.t01	Wine grape	nucleus	17.18	23.62
VIT_18s0001g03010.t01	Wine grape	nucleus	12.94	20.22
VIT_12s0035g00620.t01	Wine grape	nucleus	17.41	19.79
VIT_13s0073g00430.t01	Wine grape	nucleus	12.47	17.21

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100266402	wikigene:100266402	MapMan:15.5.4.1	ProteinID:CCB59881	ProteinID:CCB59881.1
ncoils:Coil	UniProt:F6HYW7	EMBL:FN596500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	EntrezGene:LOC100266402	wikigene:LOC100266402	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690
PANTHER:PTHR13690:SF80	SMART:SM00338	SUPFAM:SSF57959	TIGR:TC61497	UniParc:UPI00015CE5B9	ArrayExpress:VIT_05s0102g01120
EnsemblPlantsGene:VIT_05s0102g01120	EnsemblPlants:VIT_05s0102g01120.t01	unigene:Vvi.4980	RefSeq:XP_002270784	RefSeq:XP_002270784.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:23226450..23231749

Molecular Weight (calculated)

46682.4 Da

IEP (calculated)

6.572

GRAVY (calculated)

-0.864

Length

425 amino acids

Sequence
(BLAST)

001: MDKDKSPGHG GGFPPPSGRY SFSPTGNSFN AKPESSSPNL PPLPVGSGSE SSHFGHGISP DSNRFSHDIS RMPDNPPKNL GHRRAHSEIL TLPDDLSFDS
101: DLGVVGGADG PSFSDETEED LFSMYLDMDK LNSSSATSSF QMGEPSSAAP LGSASAAMTE NVVARPNDRR VRHQHSQSMD GSTSIKPEML MSGSDENSAA
201: DSKKAMSAAK LAELALIDPK RAKRIWANRQ SAARSKERKM RYIAELERKV QTLQTEATSL SAQLTLLQRD TNGLTAENSE LKLRLQTMEQ QVNLQDALND
301: ALKEEIQHLK VLTGQTMPNG APMMNFPQSY GTGAQFYPNN QAMHTLLTAQ QFQQLQIHSH KQHQLQQHQL HQLQQQQQQI QQQIQQQQMQ QEQPQQAGDL
401: KIRGSMASPS QKENASDTNS SAVKE

Best Arabidopsis Sequence Match ( AT1G06070.1 )
(BLAST)

001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD

Arabidopsis Description

At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.