Factsheet for VIT_13s0067g02900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042946	Potato	plastid	66.85	74.07
Solyc06g049040.2.1	Tomato	nucleus	66.02	71.6
Solyc06g048630.2.1	Tomato	nucleus	69.36	71.35
PGSC0003DMT400070968	Potato	nucleus	69.36	71.35
VIT_06s0004g08070.t01	Wine grape	plastid	62.12	65.2
Bra016980.1-P	Field mustard	nucleus	58.77	61.7
CDX93167	Canola	nucleus	58.5	61.22
CDY06974	Canola	nucleus	59.61	60.8
AT2G40620.1	Thale cress	nucleus	61.0	59.67
VIT_18s0001g13740.t01	Wine grape	nucleus	21.73	59.09
Bra004582.1-P	Field mustard	nucleus	58.5	58.99
CDX79976	Canola	nucleus	58.5	58.99
CDY23889	Canola	nucleus	58.22	58.87
KRH64202	Soybean	nucleus	45.68	55.41
KRH53733	Soybean	nucleus	26.18	53.41
VIT_18s0076g00330.t01	Wine grape	nucleus	39.55	40.57
VIT_05s0102g01120.t01	Wine grape	nucleus	39.83	33.65
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	18.94	23.05
VIT_19s0014g01780.t01	Wine grape	nucleus	19.5	22.65
VIT_03s0038g00860.t01	Wine grape	nucleus	40.11	21.3
VIT_18s0001g03010.t01	Wine grape	nucleus	13.65	18.01
VIT_12s0035g00620.t01	Wine grape	nucleus	18.11	17.38
VIT_13s0073g00430.t01	Wine grape	nucleus	14.21	16.56

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100250056	wikigene:100250056	MapMan:15.5.4.1	ProteinID:CCB49793	ProteinID:CCB49793.1
ncoils:Coil	UniProt:F6HC81	EMBL:FN595514	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	EntrezGene:LOC100250056	wikigene:LOC100250056	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690
PANTHER:PTHR13690:SF103	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00015CAB74	ArrayExpress:VIT_13s0067g02900	EnsemblPlantsGene:VIT_13s0067g02900
EnsemblPlants:VIT_13s0067g02900.t01	unigene:Vvi.20829	RefSeq:XP_002280180	RefSeq:XP_002280180.1	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr13:+:1562503..1569804

Molecular Weight (calculated)

39575.1 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.733

Length

359 amino acids

Sequence
(BLAST)

001: MQDPSNPNPI SHSHNAHQPP STSFPNTATS LRGGHHRRAH SEVNFRIPED LHLVSDPFDV PSASFEEMGS EDDLFCTYID IDKFGSRPEG DARIDNAGGG
101: LAAESGDGEK SSRPRHRHSN SVDGSSMSRG ESLFVDTIEA KKAMAPDKLA ELWTLDPKRA KRILANRQSA ARSKERKARY ILELERKVQT LQTEATTLSA
201: QLTLFQRDTT GLTTENTELK LRLQAMEQQA QLRDALNEAL KKEVERLKIA TGEIMTSSDA YNLGMHHVPY TQSSFFSHQS QPGPSESQNI QMPQFHPFPS
301: NMLTHHQPLL GAAHSNALSD MLQQDPLGRL QGLDISSRGP SLVKSEGPSI SASESSSTF

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.