Factsheet for PGSC0003DMT400042946

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g049040.2.1	Tomato	nucleus	91.67	89.73
PGSC0003DMT400070968	Potato	nucleus	81.48	75.64
VIT_13s0067g02900.t01	Wine grape	nucleus	74.07	66.85
CDX93167	Canola	nucleus	61.73	58.31
Bra016980.1-P	Field mustard	nucleus	61.11	57.89
CDY06974	Canola	nucleus	62.35	57.39
Bra004582.1-P	Field mustard	nucleus	62.04	56.46
CDX79976	Canola	nucleus	62.04	56.46
CDY23889	Canola	nucleus	61.11	55.77
AT2G40620.1	Thale cress	nucleus	62.04	54.77
KRH53733	Soybean	nucleus	29.01	53.41
KRH64202	Soybean	nucleus	44.14	48.31
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	34.57	42.91
PGSC0003DMT400045314	Potato	nucleus	38.89	38.65
PGSC0003DMT400002100	Potato	nucleus	38.89	37.06
PGSC0003DMT400009538	Potato	nucleus	39.2	28.6
PGSC0003DMT400004178	Potato	nucleus	44.44	24.96
PGSC0003DMT400024289	Potato	nucleus	22.22	23.76
PGSC0003DMT400020206	Potato	nucleus	21.91	23.28
PGSC0003DMT400032381	Potato	nucleus, plastid	20.37	22.84
PGSC0003DMT400024003	Potato	nucleus	19.14	17.87
PGSC0003DMT400064169	Potato	nucleus	17.9	15.89
PGSC0003DMT400005064	Potato	nucleus	14.51	15.36

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102581906	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M1BDU8	PFAM:PF00170
EnsemblPlantsGene:PGSC0003DMG400016651	PGSC:PGSC0003DMG400016651	EnsemblPlants:PGSC0003DMT400042946	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF103
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000296E731	RefSeq:XP_006358750.1	InterPro:bZIP	SEG:seg

Description

Transcription factor RF2b [Source:PGSC_GENE;Acc:PGSC0003DMG400016651]

Coordinates

chr6:-:33826692..33832963

Molecular Weight (calculated)

36015.0 Da

IEP (calculated)

6.875

GRAVY (calculated)

-0.756

Length

324 amino acids

Sequence
(BLAST)

001: MQDPSNPNSI KLPTTTSFSA AFRPSHHRRA HSEVNFRLPE DLDLVSDPFD APARSFEEIG SEDDFFSTYM DIEKLAGGSN PTDIDVAADG EKGPRHRHSN
101: SVDSSSLLMT ESIEAKKAMA PNKLAELWTI DPKRAKRILA NRQSAARSKE RKARYISELE RKVQTLQAES TTLSTQLTLS QRDTTGLTNE NTELKLRLQA
201: MEQQAQLRDA LNEALKQEVE RLKIATGQIS ASSDAYNPGM QQIQYNRPAF FPHQNIQMPQ FHHLQGSMSN PRHPLLSGNA QALADAMQQD PLGRFQGLDI
301: SSRGSHRVKS EAPSISASES SSTF

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.