Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0035g00620.t01 | Wine grape | nucleus | 64.66 | 63.1 |
| KRH59143 | Soybean | nucleus | 63.84 | 62.13 |
| KRH43037 | Soybean | nucleus | 63.29 | 61.44 |
| Bra035464.1-P | Field mustard | nucleus | 28.77 | 59.66 |
| Solyc10g044830.1.1 | Tomato | nucleus | 40.0 | 59.11 |
| AT1G58110.2 | Thale cress | nucleus | 50.96 | 49.73 |
| CDY23807 | Canola | nucleus | 44.93 | 48.81 |
| CDY46864 | Canola | nucleus | 44.66 | 48.8 |
| PGSC0003DMT400024003 | Potato | nucleus | 46.3 | 48.7 |
| TraesCS4A01G204300.1 | Wheat | nucleus | 45.48 | 47.98 |
| GSMUA_Achr8P29390_001 | Banana | nucleus | 47.95 | 47.81 |
| Zm00001d041831_P001 | Maize | mitochondrion | 45.48 | 47.7 |
| TraesCS4D01G105100.1 | Wheat | mitochondrion | 45.21 | 47.69 |
| TraesCS4B01G108000.1 | Wheat | nucleus | 44.93 | 47.4 |
| CDY39913 | Canola | nucleus | 47.95 | 47.17 |
| CDY29162 | Canola | nucleus | 48.22 | 47.06 |
| Bra027885.1-P | Field mustard | nucleus | 47.95 | 46.92 |
| Zm00001d049135_P001 | Maize | mitochondrion | 44.66 | 46.7 |
| Os11t0218000-01 | Rice | nucleus | 46.58 | 46.7 |
| KXG23197 | Sorghum | mitochondrion | 46.03 | 46.54 |
| GSMUA_Achr9P00300_001 | Banana | nucleus | 47.67 | 46.28 |
| KXG28232 | Sorghum | mitochondrion | 45.21 | 46.09 |
| Os12t0194600-01 | Rice | nucleus | 46.3 | 45.8 |
| AT4G06598.1 | Thale cress | nucleus | 31.51 | 43.4 |
| HORVU5Hr1G031130.2 | Barley | mitochondrion | 41.1 | 41.67 |
| HORVU4Hr1G016340.4 | Barley | nucleus, plastid | 45.75 | 40.53 |
| GSMUA_Achr3P02820_001 | Banana | golgi | 44.11 | 40.15 |
| Zm00001d035240_P001 | Maize | nucleus | 22.47 | 36.28 |
| PGSC0003DMT400024289 | Potato | nucleus | 25.75 | 31.02 |
| PGSC0003DMT400020206 | Potato | nucleus | 24.66 | 29.51 |
| PGSC0003DMT400032381 | Potato | nucleus, plastid | 22.74 | 28.72 |
| PGSC0003DMT400005064 | Potato | nucleus | 21.92 | 26.14 |
| PGSC0003DMT400042946 | Potato | plastid | 15.89 | 17.9 |
| PGSC0003DMT400002100 | Potato | nucleus | 16.44 | 17.65 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 12.6 | 17.62 |
| PGSC0003DMT400045314 | Potato | nucleus | 15.07 | 16.87 |
| PGSC0003DMT400070968 | Potato | nucleus | 15.89 | 16.62 |
| PGSC0003DMT400004178 | Potato | nucleus | 21.64 | 13.69 |
| PGSC0003DMT400009538 | Potato | nucleus | 16.44 | 13.51 |
Protein Annotations
| MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 | UniProt:M1CBU5 |
| EnsemblPlantsGene:PGSC0003DMG401024930 | PGSC:PGSC0003DMG401024930 | EnsemblPlants:PGSC0003DMT400064169 | PANTHER:PTHR13301 | PANTHER:PTHR13301:SF25 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI000296A104 | InterPro:bZIP | SEG:seg | : | : |
Description
Transcription factor RF2a [Source:PGSC_GENE;Acc:PGSC0003DMG401024930]
Coordinates
chr1:-:80530451..80536569
Molecular Weight (calculated)
41675.2 Da
IEP (calculated)
8.581
GRAVY (calculated)
-1.057
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MMYNGKSSLL PPKSPFPSMA PSYVDYVPSS AFNQKGIQKP REGHSHHQRT SSESCIIEEQ PSWLDDLLNE PETHVRKGSH RRSSSDSFAY FDYANAANLD
101: YTVQVDNKFR NMPHILSWGS QDFDYYKDAR QTASFVDQNS SIRRKNREND VSSTTVSHLR SLSSPGEDLR IQRSGSPCLP QDGDMSRSAG SDKQDVAESG
201: PPYPKGSVEK KDSSQSKSSS SETDTKRAKQ QFAQRSRVRK LQYIAELERN VQALQAEGSE VSAELEFLNQ QNLILSMENK ALKQRLENLA QEQLIKYLEH
301: EVLERERGRL RALYQQLHQQ PQPQQHKPSY SHRRSTSRDL DQQFANLTLK QKEAERDAVS GQLHI
101: YTVQVDNKFR NMPHILSWGS QDFDYYKDAR QTASFVDQNS SIRRKNREND VSSTTVSHLR SLSSPGEDLR IQRSGSPCLP QDGDMSRSAG SDKQDVAESG
201: PPYPKGSVEK KDSSQSKSSS SETDTKRAKQ QFAQRSRVRK LQYIAELERN VQALQAEGSE VSAELEFLNQ QNLILSMENK ALKQRLENLA QEQLIKYLEH
301: EVLERERGRL RALYQQLHQQ PQPQQHKPSY SHRRSTSRDL DQQFANLTLK QKEAERDAVS GQLHI
001: MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYSEYIP TGLIGSRHGQ KLSNEKTHHQ RTSSESHLVE ELPFWLDDLL NEQPESPARK CGHRRSSSDS
101: YAYLDVANAT NISLTLQNDF SYRNTVLSTQ RGVQELDRNK NAQDAAFYSG ASFLKQKSRQ RDSLVATGAC PSWLPFAREN GGGKNLGALY MSQDATVISS
201: ERKNYAEPFS HDPKMLSSEE NNSNPSPVTY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ RNLILSMENK ALKKRLESIA
301: QEKLIKQLEQ EVLEKEIGRL RALYQQQQQT QKPSASRGRA TSKDLDSQFS SLSLNTKDSN CRRDSVSVMG QFHF
101: YAYLDVANAT NISLTLQNDF SYRNTVLSTQ RGVQELDRNK NAQDAAFYSG ASFLKQKSRQ RDSLVATGAC PSWLPFAREN GGGKNLGALY MSQDATVISS
201: ERKNYAEPFS HDPKMLSSEE NNSNPSPVTY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ RNLILSMENK ALKKRLESIA
301: QEKLIKQLEQ EVLEKEIGRL RALYQQQQQT QKPSASRGRA TSKDLDSQFS SLSLNTKDSN CRRDSVSVMG QFHF
Arabidopsis Description
Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4I9R1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.