Factsheet for PGSC0003DMT400009538

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081190.2.1	Tomato	nucleus	95.72	95.72
HORVU3Hr1G109890.1	Barley	cytosol	8.56	61.29
VIT_18s0001g13740.t01	Wine grape	nucleus	18.02	60.61
TraesCS5A01G491600.1	Wheat	nucleus	27.25	47.27
TraesCS4D01G316900.1	Wheat	nucleus	27.03	46.33
GSMUA_Achr5P20200_001	Banana	nucleus	28.83	46.04
Zm00001d048455_P001	Maize	nucleus	31.98	42.14
CDY12108	Canola	nucleus	38.74	40.38
KRH61066	Soybean	nucleus, plastid	46.4	40.16
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	38.29	40.09
OQU92255	Sorghum	nucleus	27.48	40.0
PGSC0003DMT400004178	Potato	nucleus	51.58	39.69
TraesCS7A01G268700.1	Wheat	nucleus	41.67	39.61
TraesCS7D01G269300.1	Wheat	nucleus	42.12	39.53
CDY15909	Canola	plastid	39.41	39.41
PGSC0003DMT400042946	Potato	plastid	28.6	39.2
KRH05913	Soybean	nucleus	48.65	39.06
Zm00001d052725_P001	Maize	nucleus	40.99	39.06
GSMUA_Achr3P12290_001	Banana	nucleus	43.92	39.0
Zm00001d031723_P002	Maize	nucleus	40.77	38.92
CDX90298	Canola	nucleus	38.29	38.81
KRH17396	Soybean	nucleus	48.65	38.64
Bra010722.1-P	Field mustard	nucleus	38.51	38.43
CDX72732	Canola	nucleus	38.06	38.32
Os08t0543900-00	Rice	nucleus	39.86	38.15
TraesCS1D01G191000.1	Wheat	nucleus, plastid	33.11	38.08
GSMUA_Achr8P12090_001	Banana	nucleus	40.32	37.84
Bra030314.1-P	Field mustard	plastid	39.19	37.83
PGSC0003DMT400070968	Potato	nucleus	29.73	37.82
TraesCS1B01G193800.1	Wheat	nucleus	32.88	37.63
TraesCS1A01G186000.1	Wheat	plastid	33.11	37.6
Zm00001d027461_P001	Maize	plastid	36.04	37.56
Os03t0127500-00	Rice	nucleus	35.81	37.32
EES15257	Sorghum	nucleus	41.22	37.2
CDX99610	Canola	nucleus	36.71	36.88
CDY22407	Canola	nucleus	36.94	36.85
Bra033582.1-P	Field mustard	nucleus	36.94	36.77
Os10t0531900-01	Rice	nucleus	33.11	36.75
KXG40277	Sorghum	nucleus	35.59	36.66
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	21.17	36.02
KRH51734	Soybean	nucleus	32.43	35.91
Zm00001d029711_P001	Maize	nucleus	31.98	35.77
TraesCS4B01G320400.1	Wheat	nucleus	31.98	35.5
AT4G38900.1	Thale cress	nucleus	44.14	35.44
AT2G21230.3	Thale cress	nucleus	41.44	35.05
CDX82008	Canola	nucleus	29.28	34.95
Bra031172.1-P	Field mustard	nucleus	29.05	34.31
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	35.81	34.12
PGSC0003DMT400045314	Potato	nucleus	23.87	32.52
PGSC0003DMT400002100	Potato	nucleus	23.65	30.88
PGSC0003DMT400020206	Potato	nucleus	17.34	25.25
PGSC0003DMT400024289	Potato	nucleus	17.12	25.08
PGSC0003DMT400032381	Potato	nucleus, plastid	15.54	23.88
PGSC0003DMT400005064	Potato	nucleus	13.06	18.95
PGSC0003DMT400024003	Potato	nucleus	13.74	17.58
PGSC0003DMT400064169	Potato	nucleus	13.51	16.44

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102588100	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M0ZWF9	PFAM:PF00170
EnsemblPlantsGene:PGSC0003DMG401003720	PGSC:PGSC0003DMG401003720	EnsemblPlants:PGSC0003DMT400009538	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF76
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000296B36F	RefSeq:XP_006342019.1	InterPro:bZIP	SEG:seg

Description

Transcription factor VSF-1 [Source:PGSC_GENE;Acc:PGSC0003DMG401003720]

Coordinates

chr4:+:70560934..70564639

Molecular Weight (calculated)

48294.0 Da

IEP (calculated)

8.688

GRAVY (calculated)

-0.600

Length

444 amino acids

Sequence
(BLAST)

001: MAQSNSKPPM SGHNFGVGAA SHVRSLSQSS IFSNSCLPPL SPFPPSEPGM VSGHSSLKDI SMEEVDVNSQ GLGVVSSFTR DGLPPRKGHR RSNSDVPLGF
101: SAMIQSSPLL MPISGQKIFG RAVSLGDSNG KIDERKPKGE VTDELLFSYM NLENIETLNG SGTEDRDKDS IVSGTKLSGC ESSNNEAESV MKGNTVSIQP
201: TSLREGTKRS ADANIAPAAR HFRSLSMDSA IGNFHYGDES PNLPTSLVMR SGQLSPSNSG NESSSKHNLD FGNAEFSEAE MKKIMADERL AEIAVLDPKR
301: AKRILANRLS AARSKERKTR YISELEHKVQ KLQTETTTLS TQVTILQKNF VEISSLNSEL KFRIQAMEQQ AQLRDALHEA LTAEVQRLKL AAGEHREEGR
401: LPNNMTQQTP VKHNMFQMQR QQPSQMQQLS VGKTPAASAT PASA

Best Arabidopsis Sequence Match ( AT4G38900.3 )
(BLAST)

001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q9T0J7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.