CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031723_P002	Maize	nucleus	90.85	96.13
Zm00001d052725_P001	Maize	nucleus	87.8	92.7
Os08t0543900-00	Rice	nucleus	80.49	85.34
TraesCS7A01G268700.1	Wheat	nucleus	80.08	84.37
TraesCS7D01G269300.1	Wheat	nucleus	80.28	83.51
HORVU7Hr1G056490.1	Barley	nucleus, plastid	79.67	75.97
VIT_18s0001g13740.t01	Wine grape	nucleus	16.87	62.88
OQU92255	Sorghum	nucleus	32.11	51.8
GSMUA_Achr3P12290_001	Banana	nucleus	51.42	50.6
KXG40277	Sorghum	nucleus	41.26	47.1
PGSC0003DMT400009538	Potato	nucleus	37.2	41.22
Solyc04g081190.2.1	Tomato	nucleus	36.79	40.77
KRH61066	Soybean	nucleus, plastid	39.84	38.21
EES08023	Sorghum	nucleus	24.8	35.88
KRH05913	Soybean	nucleus	40.24	35.8
OQU92641	Sorghum	nucleus	25.2	35.53
OQU90478	Sorghum	nucleus	27.03	35.19
EER97061	Sorghum	nucleus	35.37	34.8
KRH17396	Soybean	nucleus	39.43	34.7
EER99183	Sorghum	nucleus	27.24	34.18
EES15709	Sorghum	nucleus	23.78	33.52
KRH51734	Soybean	nucleus	26.02	31.92
EES12438	Sorghum	nucleus	24.19	31.48
EES14151	Sorghum	nucleus	24.39	31.41
EES01493	Sorghum	nucleus	15.45	27.54
EES04836	Sorghum	nucleus	14.02	26.64
OQU89248	Sorghum	nucleus	12.2	24.9
KXG28232	Sorghum	mitochondrion	14.63	20.11
EES00074	Sorghum	nucleus, plastid	16.46	19.66
KXG23197	Sorghum	mitochondrion	13.41	18.28
EES06922	Sorghum	nucleus	11.18	17.03
OQU83785	Sorghum	plastid	17.89	13.62
OQU83493	Sorghum	nucleus	21.14	13.61

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8060559	UniProt:C5YH76	ncoils:Coil	EnsemblPlants:EES15257
ProteinID:EES15257	ProteinID:EES15257.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	ProteinID:OQU80772.1	PFAM:PF00170	PFscan:PS50217
PANTHER:PTHR13690	PANTHER:PTHR13690:SF76	SMART:SM00338	EnsemblPlantsGene:SORBI_3007G182500	SUPFAM:SSF57959	UniParc:UPI0001A87EE5
RefSeq:XP_002445762.1	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:61570896..61576349

Molecular Weight (calculated)

52649.7 Da

IEP (calculated)

7.408

GRAVY (calculated)

-0.779

Length

492 amino acids

Sequence
(BLAST)

001: MDDPGASADP AGAARHHLSP QQQQQLGGQP PVPRSPTPLD LASSSAAAAA SGYRRLSPSL RPPAHPQAAR LPSPYGQIPS PGGAGAHHAR SLSQPLFFSL
101: DSLPLPPPLP PYADLGAAPP AIPPSPPPST SSDPHPPPPP PLGLPPRRAG HRRSQSDIPF GFAQLSPPLP PPAPVKREVT TAADGCRSDG GGGDDAALYD
201: LVNSYMDLDG LDPLNSSEDR HEDRDSRASG TRAGSAAESS ENEAESQSTS VDRKDGGKSR HCRSLSMDSF MGKLNFAAGD ESPKLPLPSP GGSLTRSGSG
301: SMEGGAVALF DMEFANGEFT DSEKKKIMAN ERLAEIALTD PKRVKRILAN RQSAARSKER KMRYIQELEH KVQVLQTEAT TLSAQLTMLQ RDSAGLATQN
401: NELKIRLQAM EQQAQLRDAL NEALTAEVQR LKLATGEITD GHGRMPKGLQ QQMNSQMLQL QQLQIQQQVP QTQQQQGQRQ QQQQQQQPQK SA

Best Arabidopsis Sequence Match ( AT4G38900.3 )
(BLAST)

001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q9T0J7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.