CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021191_P001	Maize	plastid	76.0	83.33
Zm00001d006157_P001	Maize	nucleus	78.8	82.25
TraesCS5D01G315400.1	Wheat	plastid	40.0	42.83
HORVU5Hr1G080140.1	Barley	nucleus, plastid	38.8	42.08
TraesCS5B01G308800.1	Wheat	plastid	39.2	41.97
TraesCS5A01G308400.1	Wheat	nucleus	40.2	39.41
Os04t0181300-00	Rice	nucleus	31.4	36.85
OQU92255	Sorghum	nucleus	22.4	36.72
EES15257	Sorghum	nucleus	34.8	35.37
KXG40277	Sorghum	nucleus	27.6	32.02
EES08023	Sorghum	nucleus	21.4	31.47
EES15709	Sorghum	nucleus	20.6	29.51
EER99183	Sorghum	nucleus	23.0	29.34
OQU92641	Sorghum	nucleus	20.4	29.23
EES01493	Sorghum	nucleus	15.8	28.62
OQU90478	Sorghum	nucleus	21.6	28.57
EES12438	Sorghum	nucleus	21.2	28.04
EES14151	Sorghum	nucleus	20.8	27.23
EES04836	Sorghum	nucleus	13.6	26.25
Os09t0520400-01	Rice	nucleus	22.2	24.89
OQU89248	Sorghum	nucleus	11.2	23.24
EES00074	Sorghum	nucleus, plastid	15.4	18.69
KXG23197	Sorghum	mitochondrion	12.8	17.73
EES06922	Sorghum	nucleus	11.2	17.34
KXG28232	Sorghum	mitochondrion	11.6	16.2
OQU83785	Sorghum	plastid	14.8	11.46
OQU83493	Sorghum	nucleus	17.2	11.26

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8059020	UniProt:C5X612	ncoils:Coil	EnsemblPlants:EER97061
ProteinID:EER97061	ProteinID:EER97061.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF76	SMART:SM00338	EnsemblPlantsGene:SORBI_3002G267700
SUPFAM:SSF57959	UniParc:UPI0001A83910	RefSeq:XP_002460540.1	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:65199175..65203328

Molecular Weight (calculated)

53501.7 Da

IEP (calculated)

10.078

GRAVY (calculated)

-0.673

Length

500 amino acids

Sequence
(BLAST)

001: MDEDRTADPA RRGRLLSPMT SGQAPQTPPP QTQPQLPMDL ASQYQRRFAP TVFLPPMAPP RLASSSSGFS AFSTYQSLPT LAPPAPGAGS HLARSLPKPP
101: LFSVDSLAPL PYSTAPAAGA AAAVPRSPPS PGGSEQQVPS ASVLPPRGAG HRRSRSDFLV GFSRPNQLPP LPMTTPAAGD YSRSRDASVL EELFRSYRDP
201: NLLVSSGSGG SKNERNDHLS SSQRGWSPAD SSENEAESWA ASGNGNGSGN GNADSSSASH PRHCRSLSVD SIMSNLNFGG PGQVPLRLPP ASPVAVAGGS
301: LSRAGSGASG SAVATASSEL INGEFTESEM KKIMANDRLA EIALADPKRV KRILANRISA AKSKERKVKY MGELERKVRV LQMETSTLSS KAASSQRECE
401: ALKTMNSEMK IRLQAMEQQA QLKDALNEAL TAEVHRLKQI AGEASDPHVP NGSHHHMNRQ ILEQQLLQLQ QKQPSDAQQA QQQQQQESEQ FKAQQKQWNH

Best Arabidopsis Sequence Match ( AT4G38900.3 )
(BLAST)

001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q9T0J7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.