CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021189_P001	Maize	nucleus	88.27	93.51
Zm00001d006127_P003	Maize	nucleus	88.27	93.26
Os09t0516200-01	Rice	nucleus	80.1	82.63
TraesCS5B01G301900.1	Wheat	nucleus	77.81	80.9
TraesCS5D01G308600.1	Wheat	nucleus	77.55	80.85
TraesCS5A01G299400.1	Wheat	nucleus	77.3	80.37
HORVU5Hr1G079160.11	Barley	vacuole	77.55	68.31
CDY10170	Canola	nucleus	55.87	55.73
CDY56611	Canola	nucleus	52.04	55.43
GSMUA_AchrUn_...	Banana	nucleus	56.38	55.39
Bra015471.1-P	Field mustard	nucleus	54.85	54.85
CDY47713	Canola	nucleus	54.85	54.85
GSMUA_Achr11P...	Banana	nucleus	52.3	54.81
Bra018250.1-P	Field mustard	nucleus	52.04	54.55
EES14151	Sorghum	nucleus	53.06	54.45
CDY10799	Canola	nucleus	51.53	54.45
Bra030637.1-P	Field mustard	nucleus	52.3	53.81
CDY19094	Canola	nucleus	43.62	53.77
CDY15560	Canola	nucleus	52.04	53.54
AT2G31370.6	Thale cress	nucleus	54.08	53.27
CDY15381	Canola	nucleus	50.26	53.24
CDX86537	Canola	nucleus	52.55	52.42
VIT_05s0102g01120.t01	Wine grape	nucleus	56.63	52.24
GSMUA_Achr11P...	Banana	nucleus	59.69	52.23
Solyc06g053350.2.1	Tomato	plastid	57.65	52.07
KRH10117	Soybean	nucleus	55.61	51.9
KRH23219	Soybean	nucleus	56.38	51.64
GSMUA_Achr5P25700_001	Banana	nucleus	46.68	51.55
AT1G06070.1	Thale cress	nucleus	55.61	51.54
Bra021735.1-P	Field mustard	nucleus	43.11	49.85
KRH29611	Soybean	nucleus	47.96	48.83
EES12438	Sorghum	nucleus	46.43	48.15
KRH24606	Soybean	nucleus	47.45	46.85
EES08023	Sorghum	nucleus	35.97	41.47
EES15709	Sorghum	nucleus	34.95	39.26
OQU92641	Sorghum	nucleus	34.69	38.97
OQU92255	Sorghum	nucleus	28.32	36.39
OQU90478	Sorghum	nucleus	33.67	34.92
KXG40277	Sorghum	nucleus	34.18	31.09
EES04836	Sorghum	nucleus	19.13	28.96
EES01493	Sorghum	nucleus	19.9	28.26
EES15257	Sorghum	nucleus	34.18	27.24
EER97061	Sorghum	nucleus	29.34	23.0
OQU89248	Sorghum	nucleus	12.5	20.33
EES00074	Sorghum	nucleus, plastid	20.41	19.42
KXG23197	Sorghum	mitochondrion	17.86	19.39
KXG28232	Sorghum	mitochondrion	17.6	19.27
EES06922	Sorghum	nucleus	13.01	15.79
OQU83785	Sorghum	plastid	17.35	10.53
OQU83493	Sorghum	nucleus	17.86	9.16

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8063887	UniProt:C5X5E5	ncoils:Coil	EnsemblPlants:EER99183
ProteinID:EER99183	ProteinID:EER99183.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF80	SMART:SM00338	EnsemblPlantsGene:SORBI_3002G264100
SUPFAM:SSF57959	unigene:Sbi.14855	UniParc:UPI0001A83C80	RefSeq:XP_002462662.1	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:64872199..64876724

Molecular Weight (calculated)

42261.4 Da

IEP (calculated)

6.845

GRAVY (calculated)

-0.822

Length

392 amino acids

Sequence
(BLAST)

001: MNKDKAPMPG DGGPSDGLPP QSTRRAGAPP SSSTPPPEYD ISRMPDFPTR STGHRRAHSE ILGLPDDLDL SAPGGGDGPS LSDENDEELF SMFLDVDKLN
101: SSCGASSEAE AESSSAAGGG GEGAELGHAP RPRHQHSQSM DESMSIKAEQ LVGAPGMEGM SSAEAKKAVS AAKLAELALV DPKRAKRIWA NRQSAARSKE
201: RKMRYIAELE RKVQTLQTEA TTLSAQLALL QRDTTGLTTE NSELKVRLQT MEQQVHLQDA LNDTLKAEVQ RLKVATGQVA NGGGGMMNFG AMPRSFGGNQ
301: QMFHNNQAMQ SMLATHQLQQ LQLHSQPQQQ SQHSQHQHQH QQLHSIQAQQ QQQQLHSLQA QQLQQVARDL KMKAHLAGQG QWGDGKSGSS GS

Best Arabidopsis Sequence Match ( AT2G31370.5 )
(BLAST)

001: MDKEKSPAPP CGGLPPPSPS GRCSAFSEAG PIGHGSDANR MSHDISRMLD NPPKKIGHRR AHSEILTLPD DLSFDSDLGV VGNAADGASF SDETEEDLLS
101: MYLDMDKFNS SATSSAQVGE PSGTAWKNET MMQTGTGSTS NPQNTVNSLG ERPRIRHQHS QSMDGSMNIN EMLMSGNEDD SAIDAKKSMS ATKLAELALI
201: DPKRAKRIWA NRQSAARSKE RKTRYIFELE RKVQTLQTEA TTLSAQLTLL QRDTNGLTVE NNELKLRLQT MEQQVHLQDE LNEALKEEIQ HLKVLTGQVA
301: PSALNYGSFG SNQQQFYSNN QSMQTILAAK QFQQLQIHSQ KQQQQQQQQQ HNSISFNSNR CNSLCSSGFN SKNNKME

Arabidopsis Description

POSF21AT2G31370 protein [Source:UniProtKB/TrEMBL;Acc:B9DGB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.