CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24606	Soybean	nucleus	81.3	78.84
CDY10799	Canola	nucleus	55.58	57.68
CDY56611	Canola	nucleus	55.06	57.61
Bra018250.1-P	Field mustard	nucleus	55.58	57.22
Bra030637.1-P	Field mustard	nucleus	55.84	56.43
CDY15381	Canola	nucleus	54.03	56.22
CDY15560	Canola	nucleus	55.58	56.17
KRH10117	Soybean	nucleus	61.04	55.95
AT2G31370.6	Thale cress	nucleus	57.4	55.53
CDY10170	Canola	nucleus	56.62	55.47
CDY47713	Canola	nucleus	56.36	55.36
Bra015471.1-P	Field mustard	nucleus	56.36	55.36
KRH23219	Soybean	nucleus	60.52	54.44
CDY19094	Canola	nucleus	44.42	53.77
CDX86537	Canola	nucleus	54.81	53.69
AT1G06070.1	Thale cress	nucleus	58.18	52.96
Bra021735.1-P	Field mustard	nucleus	44.16	50.15
GSMUA_Achr11P...	Banana	nucleus	48.31	49.73
Os09t0516200-01	Rice	nucleus	48.57	49.21
Zm00001d021189_P001	Maize	nucleus	47.27	49.19
Zm00001d006127_P003	Maize	nucleus	46.75	48.52
EER99183	Sorghum	nucleus	48.83	47.96
GSMUA_AchrUn_...	Banana	nucleus	49.61	47.87
TraesCS5D01G308600.1	Wheat	nucleus	46.49	47.61
TraesCS5B01G301900.1	Wheat	nucleus	45.97	46.95
TraesCS5A01G299400.1	Wheat	nucleus	45.71	46.68
Zm00001d003180_P001	Maize	nucleus	44.68	46.61
TraesCS2A01G352100.1	Wheat	nucleus	44.94	46.38
GSMUA_Achr11P...	Banana	nucleus	53.25	45.76
GSMUA_Achr5P25700_001	Banana	nucleus	42.08	45.63
EES12438	Sorghum	nucleus	44.68	45.5
HORVU7Hr1G056230.2	Barley	nucleus	42.86	45.21
TraesCS7A01G266400.1	Wheat	nucleus	42.08	44.38
TraesCS7B01G166100.1	Wheat	nucleus	42.34	44.05
HORVU2Hr1G085560.4	Barley	nucleus, plastid	43.38	43.26
TraesCS7D01G268400.1	Wheat	nucleus	41.3	43.21
HORVU5Hr1G079160.11	Barley	vacuole	47.27	40.9
EES14151	Sorghum	nucleus	40.52	40.84
Zm00001d031697_P001	Maize	nucleus	25.45	39.36
Zm00001d052717_P001	Maize	nucleus	38.44	38.64
KRH70316	Soybean	nucleus	32.21	37.58
KRH64202	Soybean	nucleus	28.57	37.16
KRH72827	Soybean	plastid	33.51	35.44
KRH17183	Soybean	plastid	32.73	34.81
KRH53733	Soybean	nucleus	15.84	34.66
KRG98137	Soybean	nucleus	33.51	33.95
KRH30482	Soybean	nucleus	33.25	33.25
KRH08713	Soybean	nucleus	30.65	27.7
KRH35159	Soybean	nucleus	21.56	26.18
KRH24356	Soybean	nucleus	36.88	25.91
KRH29330	Soybean	nucleus	35.58	24.6
KRH61066	Soybean	nucleus, plastid	31.95	23.98
KRH05913	Soybean	nucleus	32.21	22.42
KRH22014	Soybean	nucleus, plastid	18.44	22.19
KRH17396	Soybean	nucleus	32.21	22.18
KRH27307	Soybean	plastid	16.1	21.75
KRH22317	Soybean	nucleus	16.88	20.9
KRH27013	Soybean	nucleus	16.88	20.31
KRH25692	Soybean	nucleus, plastid	17.4	20.3
KRH55826	Soybean	nucleus, plastid	17.4	19.71
KRH59143	Soybean	nucleus	17.66	18.13
KRH43037	Soybean	nucleus	17.66	18.09
KRH51734	Soybean	nucleus	17.14	16.46

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100814674	MapMan:15.5.4.1	EMBL:ACUP02006806	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G126600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1LJN8	InterPro:IPR004827	EnsemblPlants:KRH29611
ProteinID:KRH29611	ProteinID:KRH29611.1	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF80
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000233C6ED	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:9632379..9637636

Molecular Weight (calculated)

43793.9 Da

IEP (calculated)

6.807

GRAVY (calculated)

-1.119

Length

385 amino acids

Sequence
(BLAST)

001: MDNRDNKSPP PLPPSSSRYV KSEQQASLSA SSSFSHDDIS GMPENPPKNR GHRRAHSEII TLPDDLTFDV DLPDDNDLLS IYLQFDQLDS SPLPLPPPPQ
101: HNSIANNNNN NNNKNNNNNN ERPTRVRHQH SLSMDGSIHP DMLLSATAAA ADDVSGGGID TKKAMSADKL AELALVDPKR AKRIWANRQS AARSKERKMR
201: YISELERKVQ TLQTEATSLS AQLTLLQRDT TGMTAENSEL KLRLQTMEQQ VHLQDALNDA LKEEIQHLKA LTGQVMPNGG PVNFASFGGG QQFYPNNQAM
301: HTLLAAQKFQ QLQIHSQKQH QLQQQQQFQQ QQQFQQLQQL QLQQQQQLQL QQQQQQQQQQ QQQQQQQQQQ QQQLQLQQQQ QQQEQ

Best Arabidopsis Sequence Match ( AT1G06070.1 )
(BLAST)

001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD

Arabidopsis Description

At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.