CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG93749
KRG94975
KRH01443
KRH08713
KRH18312
KRH18664
KRH22317
KRH25692
KRH27013
KRH31638
KRH45160
KRH55826
KRH69070
KRH70316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	KRH08713	AT1G43700.1	17719007
AT3G58120.1	KRH70316	AT1G43700.1	17719007
AT3G58120.1	KRG89812	AT2G41090.1	17360592
AT3G58120.1	KRG94975	AT2G41090.1	17360592
AT3G58120.1	KRH18664	AT2G41090.1	17360592
AT3G58120.1	KRG89812	AT2G41100.1	17360592
AT3G58120.1	KRG94975	AT2G41100.1	17360592
AT3G58120.1	KRH18664	AT2G41100.1	17360592
AT3G58120.1	KRH22317	AT3G58120.1	17719007
AT3G58120.1	KRH25692	AT3G58120.1	17719007
AT3G58120.1	KRH27013	AT3G58120.1	17719007
AT3G58120.1	KRH55826	AT3G58120.1	17719007
AT3G58120.1	KRH31638	AT4G14640.1	17360592
AT3G58120.1	KRH69070	AT4G14640.1	17360592
AT3G58120.1	KRG89812	AT5G21274.1	17360592
AT3G58120.1	KRG94975	AT5G21274.1	17360592
AT3G58120.1	KRH18664	AT5G21274.1	17360592
AT3G58120.1	KRG93749	AT5G38800.1	17719007
AT3G58120.1	KRH01443	AT5G38800.1	17719007
AT3G58120.1	KRH18312	AT5G38800.1	17719007
AT3G58120.1	KRH45160	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25692	Soybean	nucleus, plastid	90.88	93.64
KRH22317	Soybean	nucleus	65.88	72.03
KRH27013	Soybean	nucleus	67.06	71.25
CDY56238	Canola	extracellular	27.35	69.4
CDX71974	Canola	nucleus, plastid	53.24	67.79
CDY64520	Canola	nucleus, plastid	54.12	67.4
CDX71000	Canola	nucleus, plastid	55.29	67.38
CDX79872	Canola	nucleus, plastid	55.29	67.14
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	58.24	67.12
CDY06053	Canola	nucleus	55.88	66.9
Bra004689.1-P	Field mustard	nucleus, plastid	58.82	65.36
CDY22561	Canola	nucleus, plastid	51.47	65.3
CDY35379	Canola	nucleus, plastid	51.18	64.93
CDX98266	Canola	nucleus, plastid	55.29	63.09
PGSC0003DMT400024289	Potato	nucleus	55.88	62.71
AT3G58120.1	Thale cress	nucleus	60.59	62.61
AT2G42380.2	Thale cress	nucleus, plastid	58.24	61.68
Bra003320.1-P	Field mustard	nucleus	55.0	61.51
Bra007380.1-P	Field mustard	nucleus	56.47	60.38
Solyc07g053450.2.1	Tomato	nucleus	50.29	60.21
KRH27307	Soybean	plastid	49.41	58.95
KRH22014	Soybean	nucleus, plastid	54.41	57.81
Solyc12g010800.1.1	Tomato	nucleus	51.18	56.86
PGSC0003DMT400020206	Potato	nucleus	50.59	56.39
Bra000256.1-P	Field mustard	nucleus, plastid	52.06	48.9
KRH59143	Soybean	nucleus	28.53	25.87
KRH43037	Soybean	nucleus	27.94	25.27
KRH70316	Soybean	nucleus	21.76	22.42
KRH72827	Soybean	plastid	23.82	22.25
KRH17183	Soybean	plastid	23.24	21.82
KRH64202	Soybean	nucleus	18.82	21.62
KRH30482	Soybean	nucleus	22.35	19.74
KRG98137	Soybean	nucleus	22.06	19.74
KRH53733	Soybean	nucleus	9.71	18.75
KRH10117	Soybean	nucleus	22.94	18.57
KRH23219	Soybean	nucleus	22.94	18.22
KRH29611	Soybean	nucleus	19.71	17.4
KRH24606	Soybean	nucleus	19.71	16.88
KRH35159	Soybean	nucleus	15.59	16.72
KRH08713	Soybean	nucleus	20.59	16.43
KRH61066	Soybean	nucleus, plastid	24.71	16.37
KRH05913	Soybean	nucleus	25.29	15.55
KRH17396	Soybean	nucleus	25.29	15.38
KRH24356	Soybean	nucleus	24.41	15.15
KRH29330	Soybean	nucleus	24.12	14.72
KRH51734	Soybean	nucleus	15.59	13.22

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EMBL:ACUP02004063	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G284900	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045893	UniProt:I1KEU6	InterPro:IPR004827
EnsemblPlants:KRH55826	ProteinID:KRH55826	ProteinID:KRH55826.1	PFAM:PF07716	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR13301	PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00023C7694	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:47339634..47343327

Molecular Weight (calculated)

38233.1 Da

IEP (calculated)

6.194

GRAVY (calculated)

-1.122

Length

340 amino acids

Sequence
(BLAST)

001: MAQLPPKIPN MTPNWPDFSS PHQKMPSLKT MSPNQNPSWV DEFLEFSAAR RGAHRRSVSD SITFLEAPLL DHHHCKGGSV GGGGGSGDNE FERFDDEQFM
101: SMFSDEASGN NNNNNNNNNN NNNTMMENAL SSSNPSTPSD HNSINDEKEM NNKEEEGKKQ VKNESEEDED ESQCKQEITQ LPNNDDSKNN SNANATCSSE
201: KITDPKRVKR ILANRQSAQR SRVRKLQYIS ELERSVTSLQ AEVSVLSPRV AFLDHQRLLL NVDNSALKQR IAALAQDKIF KDAHQEALKR EIERLRQVYH
301: QQNIKKMDNA AGSPPSQSPP SPSPKPRCET HTEKEQLINV

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.