CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG93749
KRG94975
KRH01443
KRH18312
KRH18664
KRH22317
KRH25692
KRH27013
KRH31638
KRH45160
KRH55826
KRH69070
KRH71054
KRH75199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G30530.1	KRH71054	AT1G13600.1	16709202
AT3G30530.1	KRH75199	AT1G13600.1	16709202
AT3G30530.1	KRG89812	AT2G41090.1	17360592
AT3G30530.1	KRG94975	AT2G41090.1	17360592
AT3G30530.1	KRH18664	AT2G41090.1	17360592
AT3G30530.1	KRG93749	AT3G30530.1	16709202
AT3G30530.1	KRH01443	AT3G30530.1	16709202
AT3G30530.1	KRH18312	AT3G30530.1	16709202
AT3G30530.1	KRH45160	AT3G30530.1	16709202
AT5G15830.1	KRG89812	AT2G41090.1	17360592
AT5G15830.1	KRG94975	AT2G41090.1	17360592
AT5G15830.1	KRH18664	AT2G41090.1	17360592
AT5G15830.1	KRG89812	AT2G41100.1	17360592
AT5G15830.1	KRG94975	AT2G41100.1	17360592
AT5G15830.1	KRH18664	AT2G41100.1	17360592
AT5G15830.1	KRH31638	AT4G14640.1	17360592
AT5G15830.1	KRH69070	AT4G14640.1	17360592
AT5G15830.1	KRG89812	AT5G21274.1	17360592
AT5G15830.1	KRG94975	AT5G21274.1	17360592
AT5G15830.1	KRH18664	AT5G21274.1	17360592
AT5G38800.1	KRG89812	AT2G41090.1	17360592
AT5G38800.1	KRG94975	AT2G41090.1	17360592
AT5G38800.1	KRH18664	AT2G41090.1	17360592
AT5G38800.1	KRG89812	AT2G41100.1	17360592
AT5G38800.1	KRG94975	AT2G41100.1	17360592
AT5G38800.1	KRH18664	AT2G41100.1	17360592
AT5G38800.1	KRH22317	AT3G58120.1	17719007
AT5G38800.1	KRH25692	AT3G58120.1	17719007
AT5G38800.1	KRH27013	AT3G58120.1	17719007
AT5G38800.1	KRH55826	AT3G58120.1	17719007
AT5G38800.1	KRH31638	AT4G14640.1	17360592
AT5G38800.1	KRH69070	AT4G14640.1	17360592
AT5G38800.1	KRG89812	AT5G21274.1	17360592
AT5G38800.1	KRG94975	AT5G21274.1	17360592
AT5G38800.1	KRH18664	AT5G21274.1	17360592
AT5G38800.1	KRG93749	AT5G38800.1	17719007
AT5G38800.1	KRH01443	AT5G38800.1	17719007
AT5G38800.1	KRH18312	AT5G38800.1	17719007
AT5G38800.1	KRH45160	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93749	Soybean	nucleus	67.29	65.45
KRH01443	Soybean	nucleus	50.47	55.38
VIT_14s0083g00700.t01	Wine grape	nucleus	50.93	55.05
PGSC0003DMT400003516	Potato	nucleus	45.79	54.44
KRH45160	Soybean	nucleus	48.6	53.89
Solyc02g089420.1.1	Tomato	nucleus	44.39	52.78
CDX85297	Canola	nucleus	42.06	52.33
CDY66911	Canola	nucleus	41.12	51.16
Bra025418.1-P	Field mustard	nucleus	40.65	50.58
AT3G30530.1	Thale cress	nucleus	40.65	50.29
CDY35775	Canola	nucleus	38.78	48.54
Bra020735.1-P	Field mustard	nucleus	37.85	47.37
KRH71054	Soybean	nucleus	43.93	47.24
KRH75199	Soybean	nucleus	43.46	46.97
AT5G38800.1	Thale cress	nucleus	35.05	45.45
Solyc03g046440.1.1	Tomato	nucleus	34.58	42.77
AT5G15830.1	Thale cress	nucleus	36.92	42.47
CDX85530	Canola	nucleus	36.45	41.49
Bra023540.1-P	Field mustard	nucleus	36.45	41.49
GSMUA_Achr9P14690_001	Banana	nucleus	29.44	40.38
Bra006324.1-P	Field mustard	nucleus	34.11	40.33
CDX90970	Canola	nucleus	36.45	40.21
CDX69495	Canola	nucleus	34.11	39.89
Bra008670.1-P	Field mustard	nucleus	34.11	39.89
CDY26467	Canola	nucleus	33.64	39.34
GSMUA_Achr8P23510_001	Banana	nucleus	29.44	39.13
EES07324	Sorghum	nucleus	30.37	38.46
CDX70656	Canola	nucleus	34.11	38.42
CDX78655	Canola	nucleus	34.58	38.34
Os02t0728001-00	Rice	nucleus	29.91	37.87
CDX70639	Canola	nucleus	33.64	37.5
GSMUA_Achr5P05350_001	Banana	nucleus	26.17	34.15
GSMUA_Achr6P36230_001	Banana	nucleus	27.57	33.71
Zm00001d051739_P001	Maize	nucleus	23.36	33.33
Zm00001d017911_P001	Maize	nucleus	27.1	32.95
Zm00001d052807_P001	Maize	nucleus	21.03	31.91
TraesCS6D01G270000.1	Wheat	nucleus	28.04	30.15
HORVU6Hr1G072490.1	Barley	nucleus	27.57	30.1
Os09t0474000-01	Rice	nucleus	24.3	30.06
Os02t0191600-00	Rice	nucleus	27.57	29.65
HORVU1Hr1G013620.1	Barley	nucleus	24.77	29.12
TraesCS6B01G318700.1	Wheat	nucleus	28.04	28.99
EES06428	Sorghum	nucleus	23.83	28.81
HORVU2Hr1G098530.1	Barley	nucleus	23.83	28.81
TraesCS5A01G250400.1	Wheat	nucleus	26.17	28.57
Zm00001d015664_P001	Maize	nucleus	22.43	28.57
TraesCS5B01G248400.1	Wheat	nucleus	25.7	28.5
HORVU5Hr1G070540.1	Barley	nucleus	25.23	28.12
EER96905	Sorghum	nucleus	24.3	27.96
TraesCS6D01G160200.1	Wheat	nucleus	22.9	27.84
TraesCS7D01G213200.1	Wheat	nucleus	23.83	27.72
TraesCS6A01G288900.1	Wheat	nucleus	26.64	27.67
Zm00001d020823_P001	Maize	nucleus	24.77	27.18
TraesCS7B01G118500.1	Wheat	nucleus	23.36	27.17
CDX70638	Canola	nucleus	20.56	27.16
TraesCS6B01G198700.1	Wheat	nucleus	22.43	27.12
CDX70640	Canola	nucleus	20.09	27.04
TraesCS7B01G293700.1	Wheat	nucleus	21.03	26.95
TraesCS5D01G258000.1	Wheat	nucleus	23.83	26.42
TraesCS7B01G293900.1	Wheat	nucleus	20.56	26.35
HORVU7Hr1G043080.1	Barley	nucleus	23.83	26.29
Zm00001d005962_P001	Maize	nucleus, plastid	20.09	26.22
TraesCS6A01G170600.1	Wheat	nucleus	21.5	25.99
TraesCS7A01G211500.1	Wheat	nucleus	22.43	25.95
Zm00001d053703_P001	Maize	nucleus	20.56	25.0
KRH03190	Soybean	cytosol, mitochondrion	12.15	25.0
KXG19789	Sorghum	nucleus	21.5	24.47
KRH56749	Soybean	nucleus	23.83	23.83
TraesCS7A01G181100.1	Wheat	nucleus	23.83	23.5
KRH63157	Soybean	nucleus	18.22	23.35
Zm00001d031272_P001	Maize	nucleus	21.96	23.27
TraesCS7D01G182900.1	Wheat	nucleus	23.83	23.08
HORVU7Hr1G037230.2	Barley	nucleus	23.83	22.97
Os08t0487100-01	Rice	nucleus	24.3	22.61
KXG25724	Sorghum	nucleus	24.3	22.51
Zm00001d037360_P001	Maize	nucleus	20.56	22.22
TraesCS7B01G086100.1	Wheat	nucleus	22.9	21.97
Zm00001d046664_P001	Maize	nucleus	19.16	21.93
KXG20422	Sorghum	nucleus	20.09	21.72
HORVU6Hr1G034810.1	Barley	nucleus	21.5	21.5
TraesCS7A01G391800.1	Wheat	mitochondrion	18.22	16.12

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EMBL:ACUP02008057	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G050700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1LWX9	InterPro:IPR004827
EnsemblPlants:KRH18312	ProteinID:KRH18312	ProteinID:KRH18312.1	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF365	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00023D181F	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:14700904..14701876

Molecular Weight (calculated)

24694.5 Da

IEP (calculated)

6.018

GRAVY (calculated)

-0.943

Length

214 amino acids

Sequence
(BLAST)

001: MQTKEVVSSL SYLLPSNPCS YPPSNNYTSM IQNSIPTFQF QRFSNQIYGC NNSHNTTYQV PDFSPQSSCI SSNSTSDEAD DQNLSLINER KHRRMLSNRE
101: SARRSRMRKQ KHLDELWSQV VWLRNENHQL IDKLNHVSET HDQVLQENSQ LKEEASELRQ MIRDMQIHSP CGGPNSFITP LEDHDVDHVP SAYLRSDDSS
201: NQFNSCNNNM DLLG

Best Arabidopsis Sequence Match ( AT3G30530.1 )
(BLAST)

001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE

Arabidopsis Description

ATBZIP42BZIP42 [Source:UniProtKB/TrEMBL;Acc:A0A178VMH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.