CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG93749
KRG94975
KRH01443
KRH08713
KRH18312
KRH18664
KRH22317
KRH25692
KRH27013
KRH31638
KRH45160
KRH55826
KRH69070
KRH70316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	KRH08713	AT1G43700.1	17719007
AT3G58120.1	KRH70316	AT1G43700.1	17719007
AT3G58120.1	KRG89812	AT2G41090.1	17360592
AT3G58120.1	KRG94975	AT2G41090.1	17360592
AT3G58120.1	KRH18664	AT2G41090.1	17360592
AT3G58120.1	KRG89812	AT2G41100.1	17360592
AT3G58120.1	KRG94975	AT2G41100.1	17360592
AT3G58120.1	KRH18664	AT2G41100.1	17360592
AT3G58120.1	KRH22317	AT3G58120.1	17719007
AT3G58120.1	KRH25692	AT3G58120.1	17719007
AT3G58120.1	KRH27013	AT3G58120.1	17719007
AT3G58120.1	KRH55826	AT3G58120.1	17719007
AT3G58120.1	KRH31638	AT4G14640.1	17360592
AT3G58120.1	KRH69070	AT4G14640.1	17360592
AT3G58120.1	KRG89812	AT5G21274.1	17360592
AT3G58120.1	KRG94975	AT5G21274.1	17360592
AT3G58120.1	KRH18664	AT5G21274.1	17360592
AT3G58120.1	KRG93749	AT5G38800.1	17719007
AT3G58120.1	KRH01443	AT5G38800.1	17719007
AT3G58120.1	KRH18312	AT5G38800.1	17719007
AT3G58120.1	KRH45160	AT5G38800.1	17719007

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27013	Soybean	nucleus	94.21	91.56
CDY56238	Canola	extracellular	30.23	70.15
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	63.67	67.12
KRH25692	Soybean	nucleus, plastid	71.06	66.97
CDX71000	Canola	nucleus, plastid	59.49	66.31
CDY64520	Canola	nucleus, plastid	57.88	65.93
CDX71974	Canola	nucleus, plastid	56.59	65.92
KRH55826	Soybean	nucleus, plastid	72.03	65.88
CDY06053	Canola	nucleus	60.13	65.85
CDX79872	Canola	nucleus, plastid	59.16	65.71
CDY35379	Canola	nucleus, plastid	56.59	65.67
CDY22561	Canola	nucleus, plastid	56.27	65.3
Bra004689.1-P	Field mustard	nucleus, plastid	63.02	64.05
CDX98266	Canola	nucleus, plastid	60.77	63.42
Bra003320.1-P	Field mustard	nucleus	60.77	62.17
PGSC0003DMT400024289	Potato	nucleus	59.49	61.06
AT3G58120.1	Thale cress	nucleus	63.67	60.18
AT2G42380.2	Thale cress	nucleus, plastid	62.06	60.12
Bra007380.1-P	Field mustard	nucleus	60.77	59.43
KRH27307	Soybean	plastid	52.73	57.54
Solyc12g010800.1.1	Tomato	nucleus	56.27	57.19
PGSC0003DMT400020206	Potato	nucleus	55.95	57.05
Solyc07g053450.2.1	Tomato	nucleus	52.09	57.04
KRH22014	Soybean	nucleus, plastid	56.91	55.31
Bra000256.1-P	Field mustard	nucleus, plastid	56.27	48.34
KRH43037	Soybean	nucleus	31.51	26.06
KRH59143	Soybean	nucleus	31.19	25.87
KRH72827	Soybean	plastid	24.76	21.15
KRH70316	Soybean	nucleus	22.19	20.91
KRH17183	Soybean	plastid	24.12	20.72
KRH64202	Soybean	nucleus	19.61	20.61
KRH30482	Soybean	nucleus	23.15	18.7
KRG98137	Soybean	nucleus	22.83	18.68
KRH10117	Soybean	nucleus	24.12	17.86
KRH23219	Soybean	nucleus	24.12	17.52
KRH29611	Soybean	nucleus	20.9	16.88
KRH35159	Soybean	nucleus	17.04	16.72
KRH24606	Soybean	nucleus	21.22	16.62
KRH53733	Soybean	nucleus	9.32	16.48
KRH08713	Soybean	nucleus	20.9	15.26
KRH61066	Soybean	nucleus, plastid	25.08	15.2
KRH17396	Soybean	nucleus	26.69	14.85
KRH05913	Soybean	nucleus	26.37	14.83
KRH24356	Soybean	nucleus	25.08	14.23
KRH29330	Soybean	nucleus	24.76	13.82
KRH51734	Soybean	nucleus	14.79	11.47

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100815433	MapMan:15.5.4.1	EMBL:ACUP02008406	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G292800
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045893	InterPro:IPR004827
UniProt:K7M2K9	EnsemblPlants:KRH22317	ProteinID:KRH22317	ProteinID:KRH22317.1	PFAM:PF07716	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR13301	PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000233BC36
InterPro:bZIP	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:39277130..39281224

Molecular Weight (calculated)

35572.6 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.925

Length

311 amino acids

Sequence
(BLAST)

001: MTQLPPKIPN MSPSWPDFSS HHQKMQLPPL KSGSNNNYQH NQNPSWVDEF LDFSSARRGA HRRSVSDSIT YLDSPMKCGE NNNNNENEFD KFDDEQFMSM
101: FTDEVVLSGV PLLPPTILSS SNPSSPSDQN FFNDEKEKKE EHHHHQLKNE ADEVESQCKQ EIMQLPNDTN TCSSNERITD PKRVKRILAN RQSAQRSRVR
201: KLQYISELER SVTSLQAEVS VLSPRVAFLD HQRLLLNVDN SALKQRIAAL AQDKIFKDAH QEALKREIER LRQVYHQQSL KKMENAAGSP LPSPKPICDA
301: QTEKEATLLN A

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.