CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10117	Soybean	nucleus	91.59	93.33
VIT_05s0102g01120.t01	Wine grape	nucleus	72.43	72.94
Solyc06g053350.2.1	Tomato	plastid	69.39	68.43
KRH29611	Soybean	nucleus	54.44	60.52
GSMUA_Achr11P...	Banana	nucleus	52.57	60.16
GSMUA_Achr5P25700_001	Banana	nucleus	49.07	59.15
Zm00001d021189_P001	Maize	nucleus	50.93	58.92
KRH24606	Soybean	nucleus	53.5	57.68
Zm00001d006127_P003	Maize	nucleus	49.53	57.14
GSMUA_AchrUn_...	Banana	nucleus	52.8	56.64
TraesCS5D01G308600.1	Wheat	nucleus	49.53	56.38
EER99183	Sorghum	nucleus	51.64	56.38
TraesCS5B01G301900.1	Wheat	nucleus	49.53	56.23
TraesCS5A01G299400.1	Wheat	nucleus	49.3	55.97
Os09t0516200-01	Rice	nucleus	49.53	55.79
GSMUA_Achr11P...	Banana	nucleus	56.78	54.24
HORVU7Hr1G056230.2	Barley	nucleus	45.09	52.88
TraesCS7A01G266400.1	Wheat	nucleus	43.93	51.51
TraesCS7B01G166100.1	Wheat	nucleus	44.16	51.08
TraesCS7D01G268400.1	Wheat	nucleus	42.99	50.0
EES12438	Sorghum	nucleus	44.16	50.0
TraesCS2A01G352100.1	Wheat	nucleus	43.46	49.87
Zm00001d031697_P001	Maize	nucleus	28.97	49.8
Zm00001d003180_P001	Maize	nucleus	42.52	49.32
HORVU2Hr1G085560.4	Barley	nucleus, plastid	43.22	47.93
EES14151	Sorghum	nucleus	42.52	47.64
HORVU5Hr1G079160.11	Barley	vacuole	49.53	47.64
Zm00001d052717_P001	Maize	nucleus	40.42	45.17
KRH72827	Soybean	plastid	33.18	39.01
KRH70316	Soybean	nucleus	29.91	38.79
KRH17183	Soybean	plastid	32.71	38.67
KRG98137	Soybean	nucleus	33.88	38.16
KRH30482	Soybean	nucleus	33.41	37.14
KRH64202	Soybean	nucleus	25.23	36.49
KRH53733	Soybean	nucleus	14.25	34.66
KRH24356	Soybean	nucleus	38.08	29.74
KRH29330	Soybean	nucleus	37.15	28.55
KRH08713	Soybean	nucleus	28.27	28.4
KRH35159	Soybean	nucleus	19.63	26.5
KRH61066	Soybean	nucleus, plastid	30.84	25.73
KRH22014	Soybean	nucleus, plastid	18.69	25.0
KRH27307	Soybean	plastid	16.59	24.91
KRH22317	Soybean	nucleus	17.52	24.12
KRH05913	Soybean	nucleus	30.84	23.87
KRH17396	Soybean	nucleus	30.84	23.61
KRH25692	Soybean	nucleus, plastid	17.99	23.33
KRH27013	Soybean	nucleus	17.29	23.12
KRH55826	Soybean	nucleus, plastid	18.22	22.94
KRH59143	Soybean	nucleus	18.93	21.6
KRH43037	Soybean	nucleus	18.46	21.01
KRH51734	Soybean	nucleus	17.52	18.7

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:778194	EMBL:ACUP02008458	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G345200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1M571	InterPro:IPR004827	EnsemblPlants:KRH23219
ProteinID:KRH23219	ProteinID:KRH23219.1	PFAM:PF00170	PFscan:PS50217	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI000233B0E4	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:43578042..43582797

Molecular Weight (calculated)

46951.6 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.814

Length

428 amino acids

Sequence
(BLAST)

001: MDKDKSLGLP PPSGRYSGYS PTRSVFNVKS EPSPSSSSTT SYPPLALGTT SSESSHFGHG MSTDSSGFSH DISRMPDNPP RNRGHRRAHS EILTLPDDIS
101: FDSDLGVVGA GDGPSFSDDA EEDLLSMYLD MDKFNSSSAT STFQMGEPSN AVGASASTPG SGAPNYSAEN VVFGTIERPR VRHQHSQSMD GSTTIKPELL
201: VSGSEDMSAA DSKKAISAAK LAELALIDPK RAKRIWANRQ SAARSKERKM RYIAELERKV QTLQTEATSL SAQLTLLQRD TNGLNSENSE LKLRLQTMEQ
301: QVHLQDALND ALKEEIQHLK ILTGQVMAPN GGPMMKLASF GGGQQFYPNN HVMHTLLAAQ QFQQLQIHPQ KQQQQQHQHQ FQQFQQQHQH QHQQHQQSSD
401: LKMRETSPTP CPKDNTSSDV NPSGAKDC

Best Arabidopsis Sequence Match ( AT1G06070.1 )
(BLAST)

001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD

Arabidopsis Description

At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.