CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23219	Soybean	nucleus	93.33	91.59
VIT_05s0102g01120.t01	Wine grape	nucleus	75.0	74.12
Solyc06g053350.2.1	Tomato	plastid	71.43	69.12
KRH29611	Soybean	nucleus	55.95	61.04
GSMUA_Achr11P...	Banana	nucleus	54.05	60.7
KRH24606	Soybean	nucleus	55.0	58.19
Zm00001d021189_P001	Maize	nucleus	51.19	58.11
GSMUA_Achr5P25700_001	Banana	nucleus	49.05	58.03
GSMUA_AchrUn_...	Banana	nucleus	54.05	56.89
Zm00001d006127_P003	Maize	nucleus	50.24	56.87
EER99183	Sorghum	nucleus	51.9	55.61
TraesCS5D01G308600.1	Wheat	nucleus	49.76	55.59
Os09t0516200-01	Rice	nucleus	50.24	55.53
TraesCS5A01G299400.1	Wheat	nucleus	49.76	55.44
TraesCS5B01G301900.1	Wheat	nucleus	49.52	55.17
GSMUA_Achr11P...	Banana	nucleus	56.9	53.35
HORVU7Hr1G056230.2	Barley	nucleus	45.71	52.6
TraesCS7B01G166100.1	Wheat	nucleus	45.0	51.08
TraesCS7A01G266400.1	Wheat	nucleus	44.29	50.96
Zm00001d031697_P001	Maize	nucleus	29.52	49.8
TraesCS2A01G352100.1	Wheat	nucleus	44.05	49.6
TraesCS7D01G268400.1	Wheat	nucleus	43.33	49.46
EES12438	Sorghum	nucleus	44.29	49.21
EES14151	Sorghum	nucleus	43.81	48.17
Zm00001d003180_P001	Maize	nucleus	41.9	47.7
HORVU2Hr1G085560.4	Barley	nucleus, plastid	43.81	47.67
HORVU5Hr1G079160.11	Barley	vacuole	50.24	47.42
Zm00001d052717_P001	Maize	nucleus	42.14	46.21
KRH70316	Soybean	nucleus	30.48	38.79
KRH72827	Soybean	plastid	33.57	38.74
KRH17183	Soybean	plastid	33.33	38.67
KRG98137	Soybean	nucleus	34.76	38.42
KRH30482	Soybean	nucleus	34.29	37.4
KRH64202	Soybean	nucleus	25.48	36.15
KRH53733	Soybean	nucleus	14.52	34.66
KRH24356	Soybean	nucleus	38.57	29.56
KRH29330	Soybean	nucleus	37.86	28.55
KRH08713	Soybean	nucleus	28.57	28.17
KRH61066	Soybean	nucleus, plastid	32.14	26.32
KRH35159	Soybean	nucleus	19.76	26.18
KRH27307	Soybean	plastid	16.9	24.91
KRH22014	Soybean	nucleus, plastid	18.81	24.69
KRH05913	Soybean	nucleus	32.14	24.41
KRH17396	Soybean	nucleus	32.14	24.15
KRH22317	Soybean	nucleus	17.86	24.12
KRH25692	Soybean	nucleus, plastid	18.33	23.33
KRH27013	Soybean	nucleus	17.62	23.12
KRH55826	Soybean	nucleus, plastid	18.57	22.94
KRH59143	Soybean	nucleus	19.29	21.6
KRH43037	Soybean	nucleus	19.05	21.28
KRH51734	Soybean	nucleus	18.33	19.2

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100786738	MapMan:15.5.4.1	EMBL:ACUP02009118	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G029100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K7M987	EnsemblPlants:KRH10117
ProteinID:KRH10117	ProteinID:KRH10117.1	ProteinID:KRH10118.1	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690
PANTHER:PTHR13690:SF80	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000233BFE4	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr15:+:2349879..2354936

Molecular Weight (calculated)

45792.3 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.773

Length

420 amino acids

Sequence
(BLAST)

001: MDKDKSLGLP PPSGRYSGYS STGSVFNVKS EPSPSSSTTL YPPLAPGTTS SESSHFGHGL STDSSGFSHD ISRMPDNPPR NRGHRRAHSE ILTLPDDISF
101: DSDLGVVGGG DGPSFSDDAE EDLLSMYLDM DKFNSSSATS TFQMVEPSNA VGASASTPAS GAPTSSTENV VIGTNERPRV RHQHSQSMDG STTIKPEMLV
201: SGSEDMSAAD SKKAMSAAKL AELALIDPKR AKRIWANRQS AARSKERKMR YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLNSENNEL KLRLQTMEQQ
301: VHLQDALNDA LKEEIQHLKI LTGQAMPPNG GPMMNFASFG GGQQFYPNNH AMHTLLAAQQ FQQLQIHPQK QQQHQFQQLQ QQQREQHQQS IDLKMREATP
401: TPCPKDNASS DVNPSGAKDC

Best Arabidopsis Sequence Match ( AT1G06070.1 )
(BLAST)

001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD

Arabidopsis Description

At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.