CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29611	Soybean	nucleus	78.84	81.3
CDY10799	Canola	nucleus	54.91	58.76
CDY56611	Canola	nucleus	54.16	58.42
Bra018250.1-P	Field mustard	nucleus	54.91	58.29
Bra030637.1-P	Field mustard	nucleus	54.66	56.96
CDY15560	Canola	nucleus	54.16	56.43
CDY15381	Canola	nucleus	52.39	56.22
Bra015471.1-P	Field mustard	nucleus	54.66	55.36
CDY47713	Canola	nucleus	54.66	55.36
KRH10117	Soybean	nucleus	58.19	55.0
CDY10170	Canola	nucleus	54.41	54.96
AT2G31370.6	Thale cress	nucleus	54.66	54.52
CDX86537	Canola	nucleus	53.4	53.94
CDY19094	Canola	nucleus	43.07	53.77
KRH23219	Soybean	nucleus	57.68	53.5
AT1G06070.1	Thale cress	nucleus	56.42	52.96
Bra021735.1-P	Field mustard	nucleus	42.82	50.15
Zm00001d021189_P001	Maize	nucleus	45.59	48.92
Os09t0516200-01	Rice	nucleus	46.6	48.68
Zm00001d006127_P003	Maize	nucleus	45.34	48.52
TraesCS5D01G308600.1	Wheat	nucleus	45.84	48.4
GSMUA_Achr11P...	Banana	nucleus	45.34	48.13
TraesCS5B01G301900.1	Wheat	nucleus	45.34	47.75
TraesCS5A01G299400.1	Wheat	nucleus	45.09	47.48
EER99183	Sorghum	nucleus	46.85	47.45
Zm00001d003180_P001	Maize	nucleus	43.83	47.15
GSMUA_AchrUn_...	Banana	nucleus	47.36	47.12
GSMUA_Achr5P25700_001	Banana	nucleus	41.56	46.48
TraesCS2A01G352100.1	Wheat	nucleus	43.32	46.11
EES12438	Sorghum	nucleus	43.83	46.03
GSMUA_Achr11P...	Banana	nucleus	51.39	45.54
HORVU7Hr1G056230.2	Barley	nucleus	41.56	45.21
TraesCS7A01G266400.1	Wheat	nucleus	40.55	44.11
TraesCS7B01G166100.1	Wheat	nucleus	40.81	43.78
HORVU2Hr1G085560.4	Barley	nucleus, plastid	42.07	43.26
TraesCS7D01G268400.1	Wheat	nucleus	39.8	42.93
HORVU5Hr1G079160.11	Barley	vacuole	48.11	42.92
EES14151	Sorghum	nucleus	39.8	41.36
Zm00001d052717_P001	Maize	nucleus	38.04	39.43
Zm00001d031697_P001	Maize	nucleus	24.69	39.36
KRH70316	Soybean	nucleus	30.48	36.67
KRH64202	Soybean	nucleus	27.2	36.49
KRH72827	Soybean	plastid	32.49	35.44
KRH17183	Soybean	plastid	31.49	34.53
KRG98137	Soybean	nucleus	32.24	33.68
KRH53733	Soybean	nucleus	14.86	33.52
KRH30482	Soybean	nucleus	31.99	32.99
KRH08713	Soybean	nucleus	29.47	27.46
KRH24356	Soybean	nucleus	35.26	25.55
KRH35159	Soybean	nucleus	20.15	25.24
KRH29330	Soybean	nucleus	34.51	24.6
KRH61066	Soybean	nucleus, plastid	29.72	23.0
KRH05913	Soybean	nucleus	30.98	22.24
KRH17396	Soybean	nucleus	30.98	22.0
KRH22014	Soybean	nucleus, plastid	17.13	21.25
KRH22317	Soybean	nucleus	16.62	21.22
KRH27307	Soybean	plastid	14.86	20.7
KRH27013	Soybean	nucleus	16.62	20.62
KRH25692	Soybean	nucleus, plastid	16.62	20.0
KRH55826	Soybean	nucleus, plastid	16.88	19.71
KRH59143	Soybean	nucleus	16.62	17.6
KRH43037	Soybean	nucleus	16.62	17.55
KRH51734	Soybean	nucleus	16.12	15.96

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100810942	MapMan:15.5.4.1	EMBL:ACUP02007179	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G051200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K7LT54	EnsemblPlants:KRH24606
ProteinID:KRH24606	ProteinID:KRH24606.1	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF80
SMART:SM00338	SUPFAM:SSF101447	SUPFAM:SSF57959	UniParc:UPI000296DD82	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:3684835..3689408

Molecular Weight (calculated)

45145.9 Da

IEP (calculated)

7.004

GRAVY (calculated)

-0.895

Length

397 amino acids

Sequence
(BLAST)

001: MRKEETRGAL QRWGTWNGIS DPFCVLNLIL YCYRLQIWWA MDRDNKSPPP SSLYVKSSSS SFSHDDISAM PENPPKNRGH RRAHSEIITL PDDLSFDADL
101: LPDDDNDLLS LYLQFDQLDS SSLPPPPPPP PPHNNINERS TRVRHQHSHS MDGSIHLEML LSAASAADDV SGGIDTKKAM SADKLAELAL VDPKRAKRIW
201: ANRQSAARSK ERKMRYISEL ERKVQTLQTE ATSLSAQLTL LQRDTHGMTA ENSELKLRLQ TMEQQVHLQD ALNDALKEEI QHLKALTGQV MPNGGPVNFA
301: SFGGGQQFYP NNQAMHTLLA AQKFQQLQIH SQKQQQHQLQ QQQQFQHQLQ QQQQFHQQQQ QLQLQQQLQQ QQQQQQQQQQ QQTAATGTVT STNGGHE

Best Arabidopsis Sequence Match ( AT1G06070.1 )
(BLAST)

001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD

Arabidopsis Description

At1g06070 [Source:UniProtKB/TrEMBL;Acc:Q9LNE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.