CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17183	Soybean	plastid	93.96	94.48
KRG98137	Soybean	nucleus	75.82	72.63
KRH30482	Soybean	nucleus	75.82	71.69
VIT_06s0004g08070.t01	Wine grape	plastid	66.48	70.76
CDY35020	Canola	nucleus	29.95	61.93
CDX86512	Canola	nucleus	51.65	59.12
CDY15590	Canola	nucleus	51.92	58.88
Bra030663.1-P	Field mustard	nucleus	51.65	58.75
Bra031541.1-P	Field mustard	nucleus	51.92	58.33
CDY06231	Canola	nucleus	51.92	58.15
CDY09952	Canola	nucleus	51.92	57.62
AT1G06850.1	Thale cress	nucleus	51.92	56.08
KRH53733	Soybean	nucleus	23.9	49.43
KRH64202	Soybean	nucleus	39.84	48.99
KRH70316	Soybean	nucleus	34.34	37.88
KRH10117	Soybean	nucleus	38.74	33.57
KRH29611	Soybean	nucleus	35.44	33.51
KRH23219	Soybean	nucleus	39.01	33.18
KRH24606	Soybean	nucleus	35.44	32.49
KRH08713	Soybean	nucleus	32.69	27.93
KRH24356	Soybean	nucleus	40.38	26.82
KRH29330	Soybean	nucleus	39.56	25.85
KRH61066	Soybean	nucleus, plastid	35.71	25.34
KRH27307	Soybean	plastid	19.78	25.26
KRH22014	Soybean	nucleus, plastid	21.98	25.0
KRH22317	Soybean	nucleus	21.15	24.76
KRH35159	Soybean	nucleus	21.43	24.61
KRH27013	Soybean	nucleus	21.15	24.06
KRH55826	Soybean	nucleus, plastid	22.25	23.82
KRH25692	Soybean	nucleus, plastid	21.43	23.64
KRH05913	Soybean	nucleus	34.34	22.6
KRH17396	Soybean	nucleus	34.62	22.54
KRH59143	Soybean	nucleus	18.96	18.4
KRH43037	Soybean	nucleus	18.13	17.55
KRH51734	Soybean	nucleus	17.86	16.21

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EMBL:ACUP02001246	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G236200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1JHM0	InterPro:IPR004827	EnsemblPlants:KRH72827	ProteinID:KRH72827
ProteinID:KRH72827.1	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF82	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI00023BCB3E	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:42368655..42371620

Molecular Weight (calculated)

39424.8 Da

IEP (calculated)

6.809

GRAVY (calculated)

-0.798

Length

364 amino acids

Sequence
(BLAST)

001: MQDPSSNPNS NPNPNPHNAN AASQLPRPPQ ATASTAVAGA FSSSLFARSG GPHHRRAHSE MSFRLPDDMM DLSPSDPFAG GSSTASMEEI GSEDDLFSTY
101: IDVDKLSGAN GSGGAGNGAD PTGEREKSPA RPRHRQSSSV DFGEIMDAKK AMPPDKLAEL WTIDPKRAKR ILANRQSAAR SKERKARYIQ ELERKVQTLQ
201: TEATTLSAQL TLYQRDTSGL STENTELKLR LQAMEQQAQL RDALNEALKK EVERLKVATG EGMSHTESFN LGMHQMPFSG SNFIPIPPQS GPSGHQNMQM
301: PPFGHSPSTM PTHQLHQTSS HPYSEILQNE QLGRFQGLDI SSKGSTLVKS EGPSLSASES SSTF

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.