Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86512 | Canola | nucleus | 81.6 | 86.48 |
| CDY15590 | Canola | nucleus | 82.2 | 86.29 |
| Bra030663.1-P | Field mustard | nucleus | 81.9 | 86.25 |
| Bra031541.1-P | Field mustard | nucleus | 82.2 | 85.49 |
| CDY09952 | Canola | nucleus | 82.49 | 84.76 |
| CDY06231 | Canola | nucleus | 81.6 | 84.62 |
| CDY35020 | Canola | nucleus | 41.84 | 80.11 |
| VIT_06s0004g08070.t01 | Wine grape | plastid | 55.19 | 54.39 |
| KRH17183 | Soybean | plastid | 56.38 | 52.49 |
| KRH72827 | Soybean | plastid | 56.08 | 51.92 |
| KRG98137 | Soybean | nucleus | 55.79 | 49.47 |
| KRH30482 | Soybean | nucleus | 55.79 | 48.83 |
| AT2G40620.1 | Thale cress | nucleus | 46.88 | 43.05 |
| AT2G31370.6 | Thale cress | nucleus | 37.09 | 31.41 |
| AT1G43700.1 | Thale cress | nucleus | 31.45 | 31.09 |
| AT1G06070.1 | Thale cress | nucleus | 36.8 | 29.31 |
| AT2G13150.1 | Thale cress | plastid | 17.51 | 22.52 |
| AT2G12900.1 | Thale cress | plastid | 17.21 | 21.97 |
| AT4G38900.1 | Thale cress | nucleus | 34.42 | 20.98 |
| AT3G58120.1 | Thale cress | nucleus | 20.47 | 20.97 |
| AT2G42380.2 | Thale cress | nucleus, plastid | 19.88 | 20.87 |
| AT2G21230.3 | Thale cress | nucleus | 31.75 | 20.38 |
| AT2G12940.1 | Thale cress | plastid | 17.51 | 20.07 |
| AT4G06598.1 | Thale cress | nucleus | 13.95 | 17.74 |
| AT1G58110.2 | Thale cress | nucleus | 18.4 | 16.58 |
| AT5G04840.1 | Thale cress | plastid | 14.54 | 15.96 |
| AT1G35490.1 | Thale cress | nucleus | 12.76 | 14.33 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EntrezGene:837197 | ProteinID:AEE28045.1 | EMBL:AJ419852 | ArrayExpress:AT1G06850 |
| EnsemblPlantsGene:AT1G06850 | RefSeq:AT1G06850 | TAIR:AT1G06850 | RefSeq:AT1G06850-TAIR-G | EnsemblPlants:AT1G06850.1 | TAIR:AT1G06850.1 |
| EMBL:AY062474 | Unigene:At.27060 | Symbol:AtbZIP52 | EMBL:BT000102 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 | RefSeq:NP_172170.1 |
| PFAM:PF00170 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50217 | PANTHER:PTHR13690 |
| PANTHER:PTHR13690:SF82 | UniProt:Q8VWG0 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000005E824 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
AtbZIP52AtbZIP transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8VWG0]
Coordinates
chr1:+:2105048..2106749
Molecular Weight (calculated)
37056.3 Da
IEP (calculated)
5.232
GRAVY (calculated)
-0.734
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSDPPPVP KPGATIIPSS DPIPNADPIP SSSFHRRSRS DDMSMFMFMD PLSSAAPPSS DDLPSDDDLF SSFIDVDSLT SNPNPFQNPS LSSNSVSGAA
101: NPPPPPSSRP RHRHSNSVDA GCAMYAGDIM DAKKAMPPEK LSELWNIDPK RAKRILANRQ SAARSKERKA RYIQELERKV QSLQTEATTL SAQLTLYQRD
201: TNGLANENTE LKLRLQAMEQ QAQLRNALNE ALRKEVERMK METGEISGNS DSFDMGMQQI QYSSSTFMAI PPYHGSMNLH DMQMHSSFNP MEMSNSQSVS
301: DFLQNGRMQG LEISSNSSSL VKSEGPSLSA SESSSAY
101: NPPPPPSSRP RHRHSNSVDA GCAMYAGDIM DAKKAMPPEK LSELWNIDPK RAKRILANRQ SAARSKERKA RYIQELERKV QSLQTEATTL SAQLTLYQRD
201: TNGLANENTE LKLRLQAMEQ QAQLRNALNE ALRKEVERMK METGEISGNS DSFDMGMQQI QYSSSTFMAI PPYHGSMNLH DMQMHSSFNP MEMSNSQSVS
301: DFLQNGRMQG LEISSNSSSL VKSEGPSLSA SESSSAY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.