Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44883 | Canola | mitochondrion, nucleus | 80.78 | 81.05 |
| CDX70198 | Canola | mitochondrion, nucleus | 80.46 | 80.46 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 80.46 | 80.46 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 49.51 | 49.35 |
| PGSC0003DMT400005064 | Potato | nucleus | 46.58 | 46.73 |
| Solyc11g006490.1.1 | Tomato | nucleus | 45.93 | 45.93 |
| Zm00001d016732_P003 | Maize | nucleus | 35.83 | 34.38 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 36.16 | 34.37 |
| EES06922 | Sorghum | nucleus | 36.16 | 34.37 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 35.83 | 34.06 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 35.83 | 34.06 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 36.16 | 34.05 |
| GSMUA_Achr3P19190_001 | Banana | nucleus | 37.78 | 34.02 |
| Zm00001d050669_P001 | Maize | nucleus | 35.18 | 33.54 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 35.18 | 33.54 |
| GSMUA_Achr10P... | Banana | nucleus | 32.9 | 30.89 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 37.46 | 29.72 |
| AT2G42380.2 | Thale cress | nucleus, plastid | 23.45 | 22.43 |
| AT3G58120.1 | Thale cress | nucleus | 23.78 | 22.19 |
| AT1G35490.1 | Thale cress | nucleus | 19.54 | 20.0 |
| AT1G58110.2 | Thale cress | nucleus | 23.78 | 19.52 |
| AT4G06598.1 | Thale cress | nucleus | 15.31 | 17.74 |
| AT1G06850.1 | Thale cress | nucleus | 15.96 | 14.54 |
| AT2G40620.1 | Thale cress | nucleus | 15.31 | 12.81 |
| AT1G06070.1 | Thale cress | nucleus | 17.26 | 12.53 |
| AT2G12900.1 | Thale cress | plastid | 10.75 | 12.5 |
| AT2G31370.6 | Thale cress | nucleus | 15.96 | 12.31 |
| AT1G43700.1 | Thale cress | nucleus | 13.36 | 12.02 |
| AT2G21230.3 | Thale cress | nucleus | 19.87 | 11.62 |
| AT2G13150.1 | Thale cress | plastid | 9.77 | 11.45 |
| AT2G12940.1 | Thale cress | plastid | 10.1 | 10.54 |
| AT4G38900.1 | Thale cress | nucleus | 18.89 | 10.49 |
Protein Annotations
| MapMan:15.5.4.1 | EntrezGene:830363 | ProteinID:AED90793.1 | ArrayExpress:AT5G04840 | EnsemblPlantsGene:AT5G04840 | RefSeq:AT5G04840 |
| TAIR:AT5G04840 | RefSeq:AT5G04840-TAIR-G | EnsemblPlants:AT5G04840.1 | TAIR:AT5G04840.1 | EMBL:AY099881 | Unigene:At.44831 |
| EMBL:BT008710 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_196104.2 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF251 | UniProt:Q8L5X9 |
| UniParc:UPI000009F554 | SEG:seg | : | : | : | : |
Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
Coordinates
chr5:+:1405181..1407962
Molecular Weight (calculated)
33435.2 Da
IEP (calculated)
7.811
GRAVY (calculated)
-0.546
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.