Factsheet for TraesCS6D01G187300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G577100.1
TraesCS2B01G610300.1
TraesCS2D01G588100.1
TraesCS4A01G184400.1
TraesCS5A01G291000.1
TraesCS5B01G289900.1
TraesCS5B01G290000.1
TraesCS5D01G298300.2
TraesCS7A01G262500.1
TraesCS7B01G160200.1
TraesCS7D01G263300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04840.1	TraesCS2A01G577100.1	AT1G76920.1	21798944
AT5G04840.1	TraesCS2B01G610300.1	AT1G76920.1	21798944
AT5G04840.1	TraesCS2D01G588100.1	AT1G76920.1	21798944
AT5G04840.1	TraesCS4A01G184400.1	AT1G76920.1	21798944
AT5G04840.1	TraesCS5A01G291000.1	AT3G15000.1	21798944
AT5G04840.1	TraesCS5B01G289900.1	AT3G15000.1	21798944
AT5G04840.1	TraesCS5B01G290000.1	AT3G15000.1	21798944
AT5G04840.1	TraesCS5D01G298300.2	AT3G15000.1	21798944
AT5G04840.1	TraesCS7A01G262500.1	AT3G15000.1	21798944
AT5G04840.1	TraesCS7B01G160200.1	AT3G15000.1	21798944
AT5G04840.1	TraesCS7D01G263300.1	AT3G15000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G222800.1	Wheat	nucleus	98.45	98.45
TraesCS6A01G203200.1	Wheat	nucleus	98.14	98.14
HORVU6Hr1G051110.4	Barley	nucleus	93.81	94.1
Os02t0538900-01	Rice	mitochondrion, nucleus	80.81	80.06
EES06922	Sorghum	nucleus	79.88	79.88
Zm00001d016732_P003	Maize	nucleus	75.54	76.25
Zm00001d050669_P001	Maize	nucleus	74.92	75.16
GSMUA_Achr3P19190_001	Banana	nucleus	51.08	48.39
GSMUA_Achr10P...	Banana	nucleus	45.51	44.95
GSMUA_Achr5P17400_001	Banana	nucleus	50.46	42.12
PGSC0003DMT400005064	Potato	nucleus	37.46	39.54
Solyc11g006490.1.1	Tomato	nucleus	36.84	38.76
VIT_13s0073g00430.t01	Wine grape	nucleus	36.53	38.31
AT5G04840.1	Thale cress	plastid	34.37	36.16
CDX70198	Canola	mitochondrion, nucleus	33.13	34.85
CDY44883	Canola	mitochondrion, nucleus	32.82	34.64
Bra009426.1-P	Field mustard	mitochondrion, nucleus	32.82	34.53
TraesCS5D01G148700.1	Wheat	nucleus	19.5	26.36
TraesCS3D01G293500.1	Wheat	nucleus	21.36	25.75
TraesCS2D01G144300.1	Wheat	nucleus	23.53	24.84
TraesCS3D01G148200.1	Wheat	nucleus	22.6	23.93
TraesCS4D01G105100.1	Wheat	mitochondrion	21.67	20.23
TraesCS4D01G171700.2	Wheat	nucleus	15.17	13.76
TraesCS4D01G316900.1	Wheat	nucleus	10.84	13.51
TraesCS4D01G110900.1	Wheat	nucleus	13.62	13.33
TraesCS7D01G268400.1	Wheat	nucleus	14.86	13.04
TraesCS1D01G191000.1	Wheat	nucleus, plastid	15.48	12.95
TraesCS2D01G105400.1	Wheat	nucleus	14.55	12.77
TraesCS5D01G132300.1	Wheat	nucleus	13.0	12.65
TraesCS5D01G308600.1	Wheat	nucleus	13.62	11.7
TraesCS7D01G269300.1	Wheat	nucleus	15.48	10.57
TraesCS5D01G315400.1	Wheat	plastid	14.86	10.28

Protein Annotations

EnsemblPlants:TraesCS6D01G187300.1	EnsemblPlantsGene:TraesCS6D01G187300	Gene3D:1.20.5.170	ncoils:Coil	PANTHER:PTHR22952	PANTHER:PTHR22952:SF251
SEG:seg	TIGR:cd14703	MapMan:15.5.4.1	:	:	:

Description

No Description!

Coordinates

chr6D:+:251230646..251241109

Molecular Weight (calculated)

35390.7 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.587

Length

323 amino acids

Sequence
(BLAST)

001: MSRSPHLPPR CPPLGPQITG RDDSLFTQSC RFPSEDPFFG EPPCWLDDLL ADSGKMPNLP PLRRACSDSD AILDALRTIQ SPIFPIEEGD LQPAGETGDS
101: LDAAVRGESD SGVEVSCVYG PNSPRQKCRL TSSESSIVNA VLENVPSNPL QYLTIDPSTS LHGNVANAKG DACDDVNHLD QDKSFKRRSG QRSRVRKLQY
201: IADLERTVDS LQNMGADLAV RVASHFQLRN ALSMENKQLR RQIASLQQAK LMKDGQTHFL KKETERLKQI SARHRRSRSV TSCFEPGSIG ADPSAINWQT
301: VDMSKLSLNG SPAPVPPRGG YGL

Best Arabidopsis Sequence Match ( AT5G04840.1 )
(BLAST)

001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN

Arabidopsis Description

At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.