Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G187300.1 | Wheat | nucleus | 94.1 | 93.81 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 93.48 | 93.19 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 93.17 | 92.88 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 79.81 | 78.83 |
| EES06922 | Sorghum | nucleus | 77.33 | 77.09 |
| Zm00001d016732_P003 | Maize | nucleus | 73.6 | 74.06 |
| Zm00001d050669_P001 | Maize | nucleus | 72.05 | 72.05 |
| GSMUA_Achr3P19190_001 | Banana | nucleus | 50.62 | 47.8 |
| GSMUA_Achr10P... | Banana | nucleus | 45.34 | 44.65 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 49.69 | 41.34 |
| PGSC0003DMT400005064 | Potato | nucleus | 36.02 | 37.91 |
| Solyc11g006490.1.1 | Tomato | nucleus | 35.71 | 37.46 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 35.71 | 37.34 |
| AT5G04840.1 | Thale cress | plastid | 33.54 | 35.18 |
| CDX70198 | Canola | mitochondrion, nucleus | 32.92 | 34.53 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 32.61 | 34.2 |
| CDY44883 | Canola | mitochondrion, nucleus | 32.3 | 33.99 |
| HORVU5Hr1G045690.1 | Barley | nucleus | 19.57 | 26.25 |
| HORVU3Hr1G072770.1 | Barley | nucleus | 21.43 | 25.94 |
| HORVU3Hr1G109890.1 | Barley | cytosol | 4.66 | 24.19 |
| HORVU3Hr1G040920.8 | Barley | nucleus | 20.5 | 21.09 |
| HORVU5Hr1G031130.2 | Barley | mitochondrion | 22.67 | 20.28 |
| HORVU4Hr1G016340.4 | Barley | nucleus, plastid | 22.05 | 17.23 |
| HORVU4Hr1G050190.1 | Barley | nucleus | 15.53 | 14.08 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 13.98 | 13.93 |
| HORVU7Hr1G056230.2 | Barley | nucleus | 15.22 | 13.42 |
| HORVU4Hr1G083000.1 | Barley | nucleus | 15.53 | 12.82 |
| HORVU4Hr1G053410.2 | Barley | cytosol | 14.6 | 12.37 |
| HORVU2Hr1G085560.4 | Barley | nucleus, plastid | 14.6 | 12.18 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 13.35 | 12.04 |
| HORVU5Hr1G080140.1 | Barley | nucleus, plastid | 14.91 | 10.41 |
| HORVU5Hr1G079160.11 | Barley | vacuole | 13.98 | 10.11 |
| HORVU2Hr1G017820.1 | Barley | nucleus | 11.18 | 9.84 |
| HORVU7Hr1G056490.1 | Barley | nucleus, plastid | 15.53 | 9.69 |
| HORVU1Hr1G049310.2 | Barley | nucleus | 11.8 | 8.86 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G051110.4 | EnsemblPlantsGene:HORVU6Hr1G051110 | ncoils:Coil | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF251 | SEG:seg |
| UniParc:UPI000B48775B | UniProt:A0A287U5V2 | MapMan:15.5.4.1 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:311131297..311145486
Molecular Weight (calculated)
35398.8 Da
IEP (calculated)
7.740
GRAVY (calculated)
-0.540
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRSPHLPPR CPPQGPQITG RDDSLFTQSC RFPSEDPFFG EPPCWLDDLL ADSVKKLNLP LLRRACSDSD AILDAMRTFR VPIFSIEGDL QPAGETGDSL
101: DAAVRGESGS GVEVSCVYGP NSPRQKCRLT SSESSIVNAV LENVPSNSLQ YLTIDPSTGL HGNVANAEGD ACDDVNHLDQ DKPFKRRSGQ RSRVRKLQYI
201: ADLERTVDSL QNMGADLAVR VASHFQLRNA LSMENKQLRR QIASLQQAKL MKDGQTHFLK KETERLKQIS VRHRRSRSVT SCFEPGSIGA DPSAINWQTL
301: DMSNLSLNGS PVPVPPRGGY GL
101: DAAVRGESGS GVEVSCVYGP NSPRQKCRLT SSESSIVNAV LENVPSNSLQ YLTIDPSTGL HGNVANAEGD ACDDVNHLDQ DKPFKRRSGQ RSRVRKLQYI
201: ADLERTVDSL QNMGADLAVR VASHFQLRNA LSMENKQLRR QIASLQQAKL MKDGQTHFLK KETERLKQIS VRHRRSRSVT SCFEPGSIGA DPSAINWQTL
301: DMSNLSLNGS PVPVPPRGGY GL
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Arabidopsis Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.