Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P08230_001 | |
| GSMUA_Achr8P07870_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P19190_001 | Banana | nucleus | 59.69 | 67.74 |
| GSMUA_Achr10P... | Banana | nucleus | 51.68 | 61.16 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 43.41 | 51.53 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 42.12 | 50.46 |
| EES06922 | Sorghum | nucleus | 41.86 | 50.15 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 41.86 | 50.15 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 41.86 | 50.15 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 41.34 | 49.69 |
| Zm00001d016732_P003 | Maize | nucleus | 39.53 | 47.81 |
| Zm00001d050669_P001 | Maize | nucleus | 39.53 | 47.52 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 32.82 | 41.23 |
| PGSC0003DMT400005064 | Potato | nucleus | 30.75 | 38.89 |
| Solyc11g006490.1.1 | Tomato | nucleus | 30.23 | 38.11 |
| AT5G04840.1 | Thale cress | plastid | 29.72 | 37.46 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 27.39 | 34.53 |
| CDX70198 | Canola | mitochondrion, nucleus | 27.39 | 34.53 |
| CDY44883 | Canola | mitochondrion, nucleus | 27.13 | 34.31 |
| GSMUA_Achr3P03550_001 | Banana | nucleus | 17.57 | 29.31 |
| GSMUA_Achr3P31390_001 | Banana | nucleus | 16.28 | 28.25 |
| GSMUA_Achr9P06540_001 | Banana | nucleus | 17.05 | 27.05 |
| GSMUA_Achr7P25310_001 | Banana | nucleus | 19.12 | 26.81 |
| GSMUA_Achr6P26930_001 | Banana | nucleus | 17.31 | 26.48 |
| GSMUA_Achr4P10560_001 | Banana | nucleus | 17.31 | 24.72 |
| GSMUA_Achr9P00300_001 | Banana | nucleus | 22.74 | 23.4 |
| GSMUA_Achr8P29390_001 | Banana | nucleus | 21.45 | 22.68 |
| GSMUA_Achr3P02820_001 | Banana | golgi | 20.67 | 19.95 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 8.27 | 16.0 |
| GSMUA_Achr11P... | Banana | nucleus | 12.4 | 15.38 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 10.85 | 14.79 |
| GSMUA_Achr6P32530_001 | Banana | nucleus | 11.63 | 14.11 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 10.34 | 13.65 |
| GSMUA_Achr11P... | Banana | nucleus | 12.92 | 13.37 |
| GSMUA_Achr5P25700_001 | Banana | nucleus | 12.14 | 13.24 |
| GSMUA_Achr2P18830_001 | Banana | nucleus | 9.82 | 13.19 |
| GSMUA_Achr10P... | Banana | nucleus | 10.59 | 13.1 |
| GSMUA_Achr10P... | Banana | nucleus | 11.11 | 12.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.11 | 12.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 12.66 | 12.28 |
| GSMUA_Achr5P29650_001 | Banana | nucleus | 11.37 | 11.55 |
| GSMUA_Achr5P20200_001 | Banana | nucleus | 8.27 | 11.51 |
| GSMUA_Achr1P08090_001 | Banana | nucleus, plastid | 13.18 | 10.94 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 11.89 | 10.85 |
| GSMUA_Achr8P12090_001 | Banana | nucleus | 13.18 | 10.78 |
| GSMUA_Achr11P... | Banana | nucleus | 12.4 | 10.71 |
| GSMUA_Achr3P12290_001 | Banana | nucleus | 13.44 | 10.4 |
Protein Annotations
| MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G17400_001 | EnsemblPlants:GSMUA_Achr5P17400_001 |
| EnsemblPlants:GSMUA_Achr5T17400_001 | InterPro:IPR004827 | UniProt:M0SZB9 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF251 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI000296AAFC | InterPro:bZIP | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G17400_001]
Coordinates
chr5:+:17607371..17611880
Molecular Weight (calculated)
43146.8 Da
IEP (calculated)
6.903
GRAVY (calculated)
-0.542
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWPAPLPPR CPFQSKGVPR RASDSAPQTP QNDTGSYAQN LMDEPPSWVD DLLAEPASGH RGISLRRSSS DPVSLLEVAT SFQGPISPAN EEDALSDSLL
101: HESLEAAGAS EVDGGFEAGS WVFGPNSPRQ RSKLTDSESS IVTALLENVP SNPLQYLTVD YPSTSVTSKP HGMEDDYTPL ANPDSHKLQR RHSGQRSRVR
201: KLQYIAELER TVDMLQTLGA DLATRVASLF QYRLALSMEN KKLRQQIASL RQEKNIKDGQ HQSLKNEAER LRMICGRHRR SKSVAACFEM DPSELDPSRI
301: NWQMLDLGKL NLGGSVFLWQ RSKTTLSRRV VSFTWNCEQG KMLNYDVKVC TLADVISTAT SHDLSNYYLF SEIHAFAHNG NYHLICL
101: HESLEAAGAS EVDGGFEAGS WVFGPNSPRQ RSKLTDSESS IVTALLENVP SNPLQYLTVD YPSTSVTSKP HGMEDDYTPL ANPDSHKLQR RHSGQRSRVR
201: KLQYIAELER TVDMLQTLGA DLATRVASLF QYRLALSMEN KKLRQQIASL RQEKNIKDGQ HQSLKNEAER LRMICGRHRR SKSVAACFEM DPSELDPSRI
301: NWQMLDLGKL NLGGSVFLWQ RSKTTLSRRV VSFTWNCEQG KMLNYDVKVC TLADVISTAT SHDLSNYYLF SEIHAFAHNG NYHLICL
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Arabidopsis Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.