Factsheet for GSMUA_Achr5P29650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	56.69	69.23
GSMUA_Achr2P18830_001	Banana	nucleus	34.38	45.49
GSMUA_Achr3P19170_001	Banana	nucleus	23.36	44.5
GSMUA_Achr6P32530_001	Banana	nucleus	37.01	44.2
GSMUA_AchrUn_...	Banana	nucleus	38.58	42.49
GSMUA_Achr6P18130_001	Banana	nucleus	29.4	38.23
GSMUA_Achr6P13040_001	Banana	nucleus	26.51	35.56
GSMUA_Achr10P...	Banana	nucleus	28.08	34.19
GSMUA_Achr5P20200_001	Banana	nucleus	22.05	30.22
GSMUA_Achr10P...	Banana	nucleus	26.51	30.06
GSMUA_Achr11P...	Banana	nucleus	29.13	29.68
GSMUA_Achr5P25700_001	Banana	nucleus	27.3	29.3
GSMUA_AchrUn_...	Banana	nucleus	29.66	28.32
GSMUA_Achr9P06540_001	Banana	nucleus	17.32	27.05
GSMUA_Achr3P31390_001	Banana	nucleus	15.75	26.91
GSMUA_Achr11P...	Banana	nucleus	30.71	26.12
GSMUA_Achr3P03550_001	Banana	nucleus	15.75	25.86
GSMUA_Achr6P26930_001	Banana	nucleus	17.06	25.69
GSMUA_Achr4P10560_001	Banana	nucleus	17.06	23.99
GSMUA_Achr7P25310_001	Banana	nucleus	17.32	23.91
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	25.2	22.64
GSMUA_Achr3P12290_001	Banana	nucleus	28.35	21.6
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	26.25	21.46
GSMUA_Achr8P12090_001	Banana	nucleus	24.93	20.08
GSMUA_Achr9P00300_001	Banana	nucleus	16.01	16.22
GSMUA_Achr8P29390_001	Banana	nucleus	14.96	15.57
GSMUA_Achr10P...	Banana	nucleus	12.07	14.07
GSMUA_Achr3P02820_001	Banana	golgi	14.17	13.47
GSMUA_Achr3P19190_001	Banana	nucleus	11.55	12.9
GSMUA_Achr5P17400_001	Banana	nucleus	11.55	11.37

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr5G29650_001
EnsemblPlants:GSMUA_Achr5P29650_001	EnsemblPlants:GSMUA_Achr5T29650_001	InterPro:IPR004827	UniProt:M0T2T9	PFAM:PF00170	PFscan:PS50217
PANTHER:PTHR13690	PANTHER:PTHR13690:SF103	SMART:SM00338	SUPFAM:SSF57959	TMHMM:TMhelix	UniParc:UPI0002963D61
InterPro:bZIP	:	:	:	:	:

Description

Transcription factor RF2b [Source:GMGC_GENE;Acc:GSMUA_Achr5G29650_001]

Coordinates

chr5:-:29294076..29301179

Molecular Weight (calculated)

42873.9 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.247

Length

381 amino acids

Sequence
(BLAST)

001: MCADDLDPRS AAPQFRGPHH RRAHSELAFR ISEDLHLGPV SEDDFFRTFM DVEKIGSGET RAQGNAAGGD ARPMHRHGSS VDVSSSRVEG VFGDVMEAKK
101: AMPPEKLAEL AVIDPRRAKR ILANRQSAAR SKQRKANYIL ELERKVQTLQ TEATTLSAQL MLLQKDISEL ATENAGLKLW LQSMEQQAQL HDGVSDALKK
201: EVERLHIVTG GKVNKSEPYN LGLLNLPYSS FMMPSEEQPK IHPQGLECHA QFCQSQLYHN DVPSDMMQQG QLKVLPGLNI RKGSIKYIVI FLLICFGIGY
301: HLVNCMIIAI VFVPLCVVLE TNFFCEQMNL GSEMLSLELQ LNLNYFSDIK PLASEFRSLA SFLEQISKVF MKVLWDNSRE R

Best Arabidopsis Sequence Match ( AT1G06850.1 )
(BLAST)

001: MEKSDPPPVP KPGATIIPSS DPIPNADPIP SSSFHRRSRS DDMSMFMFMD PLSSAAPPSS DDLPSDDDLF SSFIDVDSLT SNPNPFQNPS LSSNSVSGAA
101: NPPPPPSSRP RHRHSNSVDA GCAMYAGDIM DAKKAMPPEK LSELWNIDPK RAKRILANRQ SAARSKERKA RYIQELERKV QSLQTEATTL SAQLTLYQRD
201: TNGLANENTE LKLRLQAMEQ QAQLRNALNE ALRKEVERMK METGEISGNS DSFDMGMQQI QYSSSTFMAI PPYHGSMNLH DMQMHSSFNP MEMSNSQSVS
301: DFLQNGRMQG LEISSNSSSL VKSEGPSLSA SESSSAY

Arabidopsis Description

AtbZIP52AtbZIP transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8VWG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.