Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P29650_001 | Banana | nucleus | 69.23 | 56.69 |
| GSMUA_Achr6P32530_001 | Banana | nucleus | 44.55 | 43.57 |
| GSMUA_Achr2P18830_001 | Banana | nucleus | 40.06 | 43.4 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 27.24 | 42.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.15 | 41.62 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 33.65 | 36.97 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 34.62 | 36.86 |
| GSMUA_Achr10P... | Banana | nucleus | 33.65 | 33.55 |
| GSMUA_Achr11P... | Banana | nucleus | 40.06 | 33.42 |
| GSMUA_Achr5P25700_001 | Banana | nucleus | 36.54 | 32.11 |
| GSMUA_Achr5P20200_001 | Banana | nucleus | 27.24 | 30.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.46 | 30.08 |
| GSMUA_Achr10P... | Banana | nucleus | 32.05 | 29.76 |
| GSMUA_Achr3P31390_001 | Banana | nucleus | 19.87 | 27.8 |
| GSMUA_Achr11P... | Banana | nucleus | 39.74 | 27.68 |
| GSMUA_Achr9P06540_001 | Banana | nucleus | 21.15 | 27.05 |
| GSMUA_Achr3P03550_001 | Banana | nucleus | 19.87 | 26.72 |
| GSMUA_Achr6P26930_001 | Banana | nucleus | 21.15 | 26.09 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 34.29 | 25.24 |
| GSMUA_Achr7P25310_001 | Banana | nucleus | 21.79 | 24.64 |
| GSMUA_Achr3P12290_001 | Banana | nucleus | 38.46 | 24.0 |
| GSMUA_Achr4P10560_001 | Banana | nucleus | 20.83 | 23.99 |
| GSMUA_Achr1P08090_001 | Banana | nucleus, plastid | 33.65 | 22.53 |
| GSMUA_Achr8P12090_001 | Banana | nucleus | 33.97 | 22.41 |
| GSMUA_Achr9P00300_001 | Banana | nucleus | 20.83 | 17.29 |
| GSMUA_Achr8P29390_001 | Banana | nucleus | 19.55 | 16.67 |
| GSMUA_Achr10P... | Banana | nucleus | 15.71 | 14.98 |
| GSMUA_Achr3P02820_001 | Banana | golgi | 18.59 | 14.46 |
| GSMUA_Achr3P19190_001 | Banana | nucleus | 14.42 | 13.2 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 15.38 | 12.4 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr11G23650_001 | EnsemblPlants:GSMUA_Achr11P23650_001 | EnsemblPlants:GSMUA_Achr11T23650_001 | InterPro:IPR004827 |
| UniProt:M0RUU5 | PFAM:PF00170 | PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF82 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0002951ED2 | InterPro:bZIP | SEG:seg | : | : |
Description
Transcription factor RF2b [Source:GMGC_GENE;Acc:GSMUA_Achr11G23650_001]
Coordinates
chr11:+:23477409..23482763
Molecular Weight (calculated)
34283.6 Da
IEP (calculated)
5.116
GRAVY (calculated)
-0.611
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSKSLIPPP TTPNPNLPCP NAPVVPPSMC GGGGDLDPAP HFGGPHHRRA HSELAFRISE DLHLGPASED DVFRTYMDVE KIGSGMEDGE APASEAAEHS
101: GPRDRNSVDA SSSRGEGVFG DVMEAKKAMP PEKLAELAVI DPKRAKRILA NRQSAARSKQ RKANYIVELE RKVQTLQTEA TTLSAQLTLF QKDISELATE
201: NAGLKLWLQS MEQQAQLNDG VNDGLKQEVE RLKIATGEKV ERSEAYNLGL MNLPFLPFVM PSQEQPRNHQ RGFEFQAQIQ QSQLDNNSVP SNMMQQGHLM
301: VLPGMLSFEL ED
101: GPRDRNSVDA SSSRGEGVFG DVMEAKKAMP PEKLAELAVI DPKRAKRILA NRQSAARSKQ RKANYIVELE RKVQTLQTEA TTLSAQLTLF QKDISELATE
201: NAGLKLWLQS MEQQAQLNDG VNDGLKQEVE RLKIATGEKV ERSEAYNLGL MNLPFLPFVM PSQEQPRNHQ RGFEFQAQIQ QSQLDNNSVP SNMMQQGHLM
301: VLPGMLSFEL ED
001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM
Arabidopsis Description
BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.