Factsheet for GSMUA_Achr10P15870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P19170_001
GSMUA_Achr6P13040_001
GSMUA_Achr6P18130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	GSMUA_Achr10P...	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr10P...	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr3P19170_001	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr6P13040_001	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr6P18130_001	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13040_001	Banana	nucleus	61.31	72.54
GSMUA_Achr3P19170_001	Banana	nucleus	39.88	67.0
GSMUA_Achr6P18130_001	Banana	nucleus	54.46	62.46
GSMUA_Achr10P...	Banana	nucleus	56.25	60.38
TraesCS5B01G124200.1	Wheat	nucleus	45.54	54.64
Os12t0162500-01	Rice	plasma membrane	52.98	54.27
Zm00001d053162_P003	Maize	nucleus	54.17	53.85
Zm00001d041920_P001	Maize	nucleus	50.6	52.96
EES08023	Sorghum	nucleus	52.68	52.06
HORVU4Hr1G020540.1	Barley	nucleus	50.0	52.01
TraesCS4D01G110900.1	Wheat	nucleus	50.89	51.82
TraesCS4B01G113400.1	Wheat	nucleus	50.6	51.67
TraesCS4A01G209900.1	Wheat	nucleus	50.89	51.66
EES15709	Sorghum	nucleus	53.27	51.29
TraesCS5D01G132300.1	Wheat	nucleus	50.6	51.2
TraesCS5A01G124600.1	Wheat	nucleus	50.6	51.2
Zm00001d004857_P001	Maize	nucleus	53.27	51.14
Os11t0160500-01	Rice	nucleus, plasma membrane	34.23	48.73
HORVU5Hr1G039870.5	Barley	nucleus, plastid	51.49	48.46
Solyc06g060490.2.1	Tomato	nucleus	39.88	48.38
CDY48943	Canola	nucleus	34.52	48.13
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	35.42	45.59
Bra034916.1-P	Field mustard	nucleus, plastid	35.42	45.25
Zm00001d023507_P001	Maize	nucleus, plastid	53.27	44.97
KRH70316	Soybean	nucleus	43.15	43.94
PGSC0003DMT400045314	Potato	nucleus	42.26	43.56
VIT_18s0076g00330.t01	Wine grape	nucleus	43.75	42.0
Solyc04g071160.2.1	Tomato	nucleus	41.96	41.35
PGSC0003DMT400002100	Potato	nucleus	41.67	41.18
CDX80722	Canola	nucleus	38.69	40.37
Bra032191.1-P	Field mustard	nucleus	39.58	40.3
CDY30752	Canola	nucleus	39.29	40.0
AT1G43700.1	Thale cress	nucleus	38.69	38.12
CDY71925	Canola	nucleus	27.98	37.01
GSMUA_Achr6P32530_001	Banana	nucleus	33.04	34.8
GSMUA_Achr2P18830_001	Banana	nucleus	28.87	33.68
KRH08713	Soybean	nucleus	42.26	33.33
GSMUA_Achr11P...	Banana	nucleus	29.76	32.05
GSMUA_Achr5P25700_001	Banana	nucleus	32.74	30.99
GSMUA_AchrUn_...	Banana	nucleus	31.85	30.92
GSMUA_Achr11P...	Banana	nucleus	33.93	30.48
GSMUA_Achr5P20200_001	Banana	nucleus	25.0	30.22
GSMUA_AchrUn_...	Banana	nucleus	34.82	29.32
GSMUA_Achr11P...	Banana	nucleus	36.9	27.68
GSMUA_Achr5P29650_001	Banana	nucleus	30.06	26.51
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	30.65	24.29
GSMUA_Achr3P31390_001	Banana	nucleus	15.77	23.77
GSMUA_Achr9P06540_001	Banana	nucleus	16.96	23.36
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	31.55	22.75
GSMUA_Achr6P26930_001	Banana	nucleus	16.96	22.53
GSMUA_Achr3P03550_001	Banana	nucleus	15.48	22.41
GSMUA_Achr3P12290_001	Banana	nucleus	30.95	20.8
GSMUA_Achr8P12090_001	Banana	nucleus	28.87	20.51
GSMUA_Achr4P10560_001	Banana	nucleus	16.37	20.3
GSMUA_Achr7P25310_001	Banana	nucleus	15.77	19.2
GSMUA_Achr8P29390_001	Banana	nucleus	16.07	14.75
GSMUA_Achr9P00300_001	Banana	nucleus	15.77	14.1
GSMUA_Achr3P02820_001	Banana	golgi	15.48	12.97
GSMUA_Achr3P19190_001	Banana	nucleus	12.5	12.32
GSMUA_Achr5P17400_001	Banana	nucleus	12.8	11.11
GSMUA_Achr10P...	Banana	nucleus	10.42	10.7

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G15870_001	EnsemblPlants:GSMUA_Achr10P15870_001	EnsemblPlants:GSMUA_Achr10T15870_001	InterPro:IPR004827
UniProt:M0RIL2	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002948B32	InterPro:bZIP	SEG:seg	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G15870_001]

Coordinates

chr10:-:23640502..23645066

Molecular Weight (calculated)

36757.1 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.729

Length

336 amino acids

Sequence
(BLAST)

001: MPFTSLHFAL RMYDFASRPS SRNLHHPISE HPAMDPAGPL QPPNPRFGQI PLPTPRGLGV GGCGGGAAHR RAHSETFIRV PDDLLCYSDL DFGIPDMDFS
101: SFSEEYLSGD GGAPIAATGR PGAAAGSGDD GVLGSERKGH HRRSGSMDGA ASPLEQESLP PLSDFAKKEM ASDKLAELAL IDPKRAKRIL ANRQSAARSK
201: ERKIRYTSEL ERKVQTLQTE ATSLSTQLTL LQKDTTGLTT ENRELKLRLH SMEQQAQLRE ALNETLREEV QRLKKATGQL PRANGNPRNI VIQQSIPNYY
301: SHSSNQAQHL HASEAQESSN DKSPSGQCLD DPMDFT

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.