Factsheet for Zm00001d053162_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004857_P001
Zm00001d023507_P001
Zm00001d041920_P001
Zm00001d053162_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	Zm00001d004857_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d023507_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d041920_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d053162_P003	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08023	Sorghum	nucleus	90.83	90.29
Zm00001d004857_P001	Maize	nucleus	91.72	88.57
TraesCS5B01G124200.1	Wheat	nucleus	67.75	81.79
HORVU4Hr1G020540.1	Barley	nucleus	77.51	81.11
TraesCS4D01G110900.1	Wheat	nucleus	78.4	80.3
TraesCS4B01G113400.1	Wheat	nucleus	77.81	79.94
TraesCS4A01G209900.1	Wheat	nucleus	78.11	79.76
TraesCS5A01G124600.1	Wheat	nucleus	74.85	76.2
TraesCS5D01G132300.1	Wheat	nucleus	74.56	75.9
Zm00001d041920_P001	Maize	nucleus	70.41	74.14
HORVU5Hr1G039870.5	Barley	nucleus, plastid	73.08	69.19
GSMUA_Achr3P19170_001	Banana	nucleus	40.53	68.5
GSMUA_Achr6P18130_001	Banana	nucleus	58.28	67.24
GSMUA_Achr10P...	Banana	nucleus	60.06	64.86
Zm00001d023507_P001	Maize	nucleus, plastid	74.56	63.32
GSMUA_Achr6P13040_001	Banana	nucleus	50.3	59.86
Solyc06g060490.2.1	Tomato	nucleus	46.15	56.32
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	42.01	54.41
GSMUA_Achr10P...	Banana	nucleus	53.85	54.17
PGSC0003DMT400045314	Potato	nucleus	49.7	51.53
CDY48943	Canola	nucleus	36.39	51.04
VIT_18s0076g00330.t01	Wine grape	nucleus	51.78	50.0
Solyc04g071160.2.1	Tomato	nucleus	50.0	49.56
PGSC0003DMT400002100	Potato	nucleus	49.41	49.12
Bra034916.1-P	Field mustard	nucleus, plastid	38.17	49.05
KRH70316	Soybean	nucleus	47.63	48.79
Bra032191.1-P	Field mustard	nucleus	46.45	47.58
CDY30752	Canola	nucleus	46.45	47.58
CDX80722	Canola	nucleus	43.79	45.96
AT1G43700.1	Thale cress	nucleus	45.27	44.87
CDY71925	Canola	nucleus	32.54	43.31
Zm00001d021189_P001	Maize	nucleus	41.72	38.11
Zm00001d006127_P003	Maize	nucleus	40.83	37.2
KRH08713	Soybean	nucleus	45.27	35.92
Zm00001d029064_P001	Maize	nucleus	35.8	34.97
Zm00001d003180_P001	Maize	nucleus	37.87	34.69
Zm00001d047519_P001	Maize	nucleus	35.21	33.71
Zm00001d007172_P001	Maize	plastid	36.09	33.7
Zm00001d022442_P001	Maize	nucleus	36.39	32.89
Zm00001d048455_P001	Maize	nucleus	31.95	32.05
Zm00001d031697_P001	Maize	nucleus	22.78	30.92
Zm00001d052717_P001	Maize	nucleus	34.91	30.81
Zm00001d029711_P001	Maize	nucleus	34.32	29.22
Zm00001d027461_P001	Maize	plastid	33.73	26.76
Zm00001d016154_P001	Maize	nucleus	18.93	25.4
Zm00001d043420_P001	Maize	nucleus	20.41	24.82
Zm00001d053442_P001	Maize	nucleus	18.93	24.81
Zm00001d031723_P002	Maize	nucleus	34.02	24.73
Zm00001d052725_P001	Maize	nucleus	34.02	24.68
Zm00001d012719_P001	Maize	nucleus	20.41	24.64
Zm00001d021191_P001	Maize	plastid	31.95	23.68
Zm00001d039383_P001	Maize	nucleus	19.53	22.92
Zm00001d006157_P001	Maize	nucleus	31.36	22.13
Zm00001d035240_P001	Maize	nucleus	11.83	17.7
Zm00001d041831_P001	Maize	mitochondrion	17.75	17.24
Zm00001d049135_P001	Maize	mitochondrion	16.86	16.33
Zm00001d016732_P003	Maize	nucleus	14.2	15.0
Zm00001d050669_P001	Maize	nucleus	13.61	14.29
Zm00001d007364_P001	Maize	nucleus	20.12	10.68

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100273609	MapMan:15.5.4.1	ProteinID:AQK58859.1	UniProt:B4FWJ9	EMBL:BT041487
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	EMBL:KJ727598	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00017B7CF6	EnsemblPlantsGene:Zm00001d053162	EnsemblPlants:Zm00001d053162_P003	EnsemblPlants:Zm00001d053162_T003
InterPro:bZIP	SEG:seg	:	:	:	:

Description

bZIP-transcription factor 110Transcription factor VIP1

Coordinates

chr4:+:217387342..217403410

Molecular Weight (calculated)

36339.5 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.765

Length

338 amino acids

Sequence
(BLAST)

001: MDPRFPPPAP SSCFGGGGEL PARGHHRRAH SETFIRLPDA DLLLDPDADF GFSDIDFPSL SDDSPAASDP TPQPQAPPLQ PPLQQAASPA SAAPPRPPSG
101: AHMRSLSLDA AFFDGLSLQG GGGGGGVRGG MAGHKRSGSM DGDTSPFEGE SAPPSVLPDY AKKAVPDDKL AELALLDPKR AKRILANRQS AARSKERKIK
201: YTSELERKVQ TLQTEATTLS AQLTLLQRDT SGLTTENREL KLRLQAMEEQ AKLRDALNDA LREEVQRLKI AAGQVPNMNG NPFNGGLSQQ QQMPSYFSQP
301: QQMQYFSGHQ GQHHHPKHDP QNSSNGGGQP LSDSMDFM

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.