Factsheet for Zm00001d004857_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004857_P001
Zm00001d023507_P001
Zm00001d041920_P001
Zm00001d053162_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	Zm00001d004857_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d023507_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d041920_P001	AT1G43700.1	15824315
AT1G43700.1	Zm00001d053162_P003	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053162_P003	Maize	nucleus	88.57	91.72
EES08023	Sorghum	nucleus	86.57	89.12
TraesCS5B01G124200.1	Wheat	nucleus	64.29	80.36
HORVU4Hr1G020540.1	Barley	nucleus	72.86	78.95
TraesCS4D01G110900.1	Wheat	nucleus	74.0	78.48
TraesCS4A01G209900.1	Wheat	nucleus	73.71	77.95
TraesCS4B01G113400.1	Wheat	nucleus	73.14	77.81
TraesCS5A01G124600.1	Wheat	nucleus	71.14	75.0
TraesCS5D01G132300.1	Wheat	nucleus	70.86	74.7
Zm00001d041920_P001	Maize	nucleus	67.71	73.83
GSMUA_Achr3P19170_001	Banana	nucleus	39.43	69.0
HORVU5Hr1G039870.5	Barley	nucleus, plastid	69.43	68.07
GSMUA_Achr6P18130_001	Banana	nucleus	56.29	67.24
GSMUA_Achr10P...	Banana	nucleus	57.71	64.54
Zm00001d023507_P001	Maize	nucleus, plastid	70.57	62.06
GSMUA_Achr6P13040_001	Banana	nucleus	48.29	59.51
Solyc06g060490.2.1	Tomato	nucleus	44.86	56.68
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	41.14	55.17
GSMUA_Achr10P...	Banana	nucleus	51.14	53.27
PGSC0003DMT400045314	Potato	nucleus	48.86	52.45
VIT_18s0076g00330.t01	Wine grape	nucleus	50.86	50.86
CDY48943	Canola	nucleus	34.86	50.62
Solyc04g071160.2.1	Tomato	nucleus	48.86	50.15
PGSC0003DMT400002100	Potato	nucleus	48.29	49.71
KRH70316	Soybean	nucleus	46.0	48.79
Bra034916.1-P	Field mustard	nucleus, plastid	36.57	48.67
Bra032191.1-P	Field mustard	nucleus	44.0	46.67
CDY30752	Canola	nucleus	44.0	46.67
CDX80722	Canola	nucleus	41.71	45.34
AT1G43700.1	Thale cress	nucleus	43.14	44.28
CDY71925	Canola	nucleus	31.14	42.91
Zm00001d021189_P001	Maize	nucleus	39.43	37.3
Zm00001d006127_P003	Maize	nucleus	38.29	36.12
Zm00001d029064_P001	Maize	nucleus	35.14	35.55
KRH08713	Soybean	nucleus	42.57	34.98
Zm00001d003180_P001	Maize	nucleus	36.57	34.69
Zm00001d007172_P001	Maize	plastid	35.43	34.25
Zm00001d047519_P001	Maize	nucleus	34.29	33.99
Zm00001d022442_P001	Maize	nucleus	35.71	33.42
Zm00001d048455_P001	Maize	nucleus	30.29	31.45
Zm00001d052717_P001	Maize	nucleus	33.71	30.81
Zm00001d031697_P001	Maize	nucleus	21.43	30.12
Zm00001d029711_P001	Maize	nucleus	32.0	28.21
Zm00001d027461_P001	Maize	plastid	32.29	26.53
Zm00001d031723_P002	Maize	nucleus	33.43	25.16
Zm00001d052725_P001	Maize	nucleus	33.43	25.11
Zm00001d016154_P001	Maize	nucleus	18.0	25.0
Zm00001d053442_P001	Maize	nucleus	18.0	24.42
Zm00001d043420_P001	Maize	nucleus	19.14	24.1
Zm00001d012719_P001	Maize	nucleus	19.14	23.93
Zm00001d021191_P001	Maize	plastid	30.86	23.68
Zm00001d039383_P001	Maize	nucleus	18.86	22.92
Zm00001d006157_P001	Maize	nucleus	29.71	21.71
Zm00001d035240_P001	Maize	nucleus	10.86	16.81
Zm00001d041831_P001	Maize	mitochondrion	16.57	16.67
Zm00001d049135_P001	Maize	mitochondrion	15.71	15.76
Zm00001d016732_P003	Maize	nucleus	14.0	15.31
Zm00001d050669_P001	Maize	nucleus	13.71	14.91
Zm00001d007364_P001	Maize	nucleus	18.86	10.36

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100285024	MapMan:15.5.4.1	UniProt:A0A1D6EHT9	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	ProteinID:ONM19693.1
PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0008430608	EnsemblPlantsGene:Zm00001d004857	EnsemblPlants:Zm00001d004857_P001	EnsemblPlants:Zm00001d004857_T001	InterPro:bZIP	SEG:seg

Description

bZIP-transcription factor 23Transcription factor VIP1

Coordinates

chr2:-:145114887..145119368

Molecular Weight (calculated)

37781.4 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.608

Length

350 amino acids

Sequence
(BLAST)

001: MDLRFPPPAP SSCFGGGGVL PARGHHRRAQ SETFIRLPDA DLLLDPDADF GFSDIDFPSL SDDSPAASDP TPQPQAPPPQ QPLPQAASPA SAAPPRPPSG
101: AHMRSLSLDA AFFDGLSLQG GGGVAGHKRS GSMDGATSPF EGESAPTSVL PDYAKKAVPD DRLAELALLD PKRAKRILAN RQSAARSKER KIKYTSELER
201: KVQTLQTEAT TLSAQLTLLQ FRTSLILFPL SCCNSLVMQR DTSGLTTENR ELKLRLQAME EQAKLRDALN DALREEVQRL KIATGQVPNI NGNPFNGGLP
301: QQQQVPSYFS QPQGMQYFSS HQGQHQHPNH HPQSSSNGGG QSLSDSMDFM

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.