Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G110900.1 | Wheat | nucleus | 98.78 | 98.48 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 98.48 | 97.89 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 94.83 | 96.59 |
| TraesCS5B01G124200.1 | Wheat | nucleus | 72.34 | 85.0 |
| Zm00001d053162_P003 | Maize | nucleus | 79.94 | 77.81 |
| EES08023 | Sorghum | nucleus | 79.03 | 76.47 |
| Zm00001d004857_P001 | Maize | nucleus | 77.81 | 73.14 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 39.82 | 65.5 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 56.53 | 63.48 |
| GSMUA_Achr10P... | Banana | nucleus | 56.23 | 59.11 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 47.42 | 54.93 |
| Solyc06g060490.2.1 | Tomato | nucleus | 45.9 | 54.51 |
| CDY48943 | Canola | nucleus | 37.69 | 51.45 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 40.43 | 50.96 |
| GSMUA_Achr10P... | Banana | nucleus | 51.67 | 50.6 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 39.51 | 49.43 |
| PGSC0003DMT400045314 | Potato | nucleus | 48.94 | 49.39 |
| Bra032191.1-P | Field mustard | nucleus | 48.33 | 48.18 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 51.06 | 48.0 |
| CDY30752 | Canola | nucleus | 48.02 | 47.88 |
| PGSC0003DMT400002100 | Potato | nucleus | 48.33 | 46.76 |
| Solyc04g071160.2.1 | Tomato | nucleus | 48.33 | 46.63 |
| KRH70316 | Soybean | nucleus | 46.5 | 46.36 |
| CDX80722 | Canola | nucleus | 44.98 | 45.96 |
| CDY71925 | Canola | nucleus | 34.95 | 45.28 |
| AT1G43700.1 | Thale cress | nucleus | 46.5 | 44.87 |
| KRH08713 | Soybean | nucleus | 44.68 | 34.51 |
| TraesCS4B01G169600.1 | Wheat | nucleus | 36.78 | 33.99 |
| TraesCS5B01G301900.1 | Wheat | nucleus | 38.91 | 33.95 |
| TraesCS7B01G166100.1 | Wheat | nucleus | 37.08 | 32.97 |
| TraesCS2B01G122700.1 | Wheat | nucleus | 34.95 | 31.08 |
| TraesCS1B01G193800.1 | Wheat | nucleus | 31.91 | 27.06 |
| TraesCS4B01G320400.1 | Wheat | nucleus | 32.52 | 26.75 |
| TraesCS5B01G142200.1 | Wheat | nucleus | 18.84 | 25.94 |
| TraesCS3B01G328400.1 | Wheat | nucleus | 20.36 | 25.0 |
| TraesCS3B01G167500.1 | Wheat | nucleus | 18.54 | 20.89 |
| TraesCS2B01G165700.1 | Wheat | nucleus | 18.84 | 20.2 |
| TraesCS5B01G308800.1 | Wheat | plastid | 25.53 | 17.99 |
| TraesCS4B01G108000.1 | Wheat | nucleus | 17.02 | 16.18 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 13.07 | 13.31 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G113400.1 | EnsemblPlantsGene:TraesCS4B01G113400 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | ncoils:Coil | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 | PFAM:PF00170 | PFscan:PS50217 |
| SEG:seg | SMART:SM00338 | SUPFAM:SSF57959 | TIGR:cd14703 | MapMan:15.5.4.1 | : |
Description
No Description!
Coordinates
chr4B:-:128055695..128059119
Molecular Weight (calculated)
35235.0 Da
IEP (calculated)
6.979
GRAVY (calculated)
-0.812
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPRFPPPAP SSAAGGAPRG HRRAHSETFI RFPDADLLLD PDSDFSFSDL DFPSLSDDSP AVSSDPNPPP PPLPPQQQGA AASPSPAPRP PGGGGAHMRS
101: LSLDAAFFDG LALQGGGGGG AGHKRSGSMD GASSPSDGES ALSGGLPDYA KKAIPAERLA ELALLDPKRA KRILANRQSA ARSKERKIKY TGELERKVQT
201: LQTEATTLSA QLTLLQRDTS GLTVENRELK LRLQSMEEQA KLRDALNDAL REEVQRLKIA AGQVPNMNGN PFGGGLHQHQ QQQQQIPNYF SQQQMHYQGH
301: QHHHPQNHSQ NSSNGGQSLS GQSDSMDFM
101: LSLDAAFFDG LALQGGGGGG AGHKRSGSMD GASSPSDGES ALSGGLPDYA KKAIPAERLA ELALLDPKRA KRILANRQSA ARSKERKIKY TGELERKVQT
201: LQTEATTLSA QLTLLQRDTS GLTVENRELK LRLQSMEEQA KLRDALNDAL REEVQRLKIA AGQVPNMNGN PFGGGLHQHQ QQQQQIPNYF SQQQMHYQGH
301: QHHHPQNHSQ NSSNGGQSLS GQSDSMDFM
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.