Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0076g00330.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43700.1 | VIT_18s0076g00330.t01 | AT1G43700.1 | 15824315 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 48.86 | 65.52 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 36.0 | 63.0 |
| Solyc06g060490.2.1 | Tomato | nucleus | 49.43 | 62.45 |
| PGSC0003DMT400002100 | Potato | nucleus | 58.57 | 60.29 |
| Solyc04g071160.2.1 | Tomato | nucleus | 58.57 | 60.12 |
| VIT_18s0001g13740.t01 | Wine grape | nucleus | 22.57 | 59.85 |
| PGSC0003DMT400045314 | Potato | nucleus | 55.43 | 59.51 |
| CDY48943 | Canola | nucleus | 40.86 | 59.34 |
| TraesCS5B01G124200.1 | Wheat | nucleus | 45.71 | 57.14 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 41.71 | 55.51 |
| KRH70316 | Soybean | nucleus | 50.29 | 53.33 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 44.57 | 53.24 |
| Os12t0162500-01 | Rice | plasma membrane | 49.43 | 52.74 |
| Bra032191.1-P | Field mustard | nucleus | 49.71 | 52.73 |
| CDY30752 | Canola | nucleus | 49.71 | 52.73 |
| CDX80722 | Canola | nucleus | 48.29 | 52.48 |
| AT1G43700.1 | Thale cress | nucleus | 50.57 | 51.91 |
| Zm00001d053162_P003 | Maize | nucleus | 50.0 | 51.78 |
| Zm00001d041920_P001 | Maize | nucleus | 47.43 | 51.71 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 47.71 | 51.7 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 48.86 | 51.51 |
| EES08023 | Sorghum | nucleus | 50.0 | 51.47 |
| TraesCS4B01G113400.1 | Wheat | nucleus | 48.0 | 51.06 |
| TraesCS4D01G110900.1 | Wheat | nucleus | 48.0 | 50.91 |
| TraesCS5A01G124600.1 | Wheat | nucleus | 48.29 | 50.9 |
| Zm00001d004857_P001 | Maize | nucleus | 50.86 | 50.86 |
| EES15709 | Sorghum | nucleus | 50.57 | 50.72 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 47.71 | 50.45 |
| GSMUA_Achr10P... | Banana | nucleus | 44.29 | 49.52 |
| Os11t0160500-01 | Rice | nucleus, plasma membrane | 32.86 | 48.73 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 39.14 | 48.24 |
| CDY71925 | Canola | nucleus | 34.29 | 47.24 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 47.14 | 46.22 |
| Zm00001d023507_P001 | Maize | nucleus, plastid | 50.57 | 44.47 |
| GSMUA_Achr10P... | Banana | nucleus | 42.0 | 43.75 |
| VIT_06s0004g08070.t01 | Wine grape | plastid | 38.86 | 39.77 |
| KRH08713 | Soybean | nucleus | 48.29 | 39.67 |
| VIT_13s0067g02900.t01 | Wine grape | nucleus | 40.57 | 39.55 |
| VIT_05s0102g01120.t01 | Wine grape | nucleus | 41.43 | 34.12 |
| VIT_12s0028g02590.t01 | Wine grape | nucleus, plastid | 20.0 | 23.73 |
| VIT_19s0014g01780.t01 | Wine grape | nucleus | 19.71 | 22.33 |
| VIT_03s0038g00860.t01 | Wine grape | nucleus | 36.86 | 19.08 |
| VIT_18s0001g03010.t01 | Wine grape | nucleus | 14.29 | 18.38 |
| VIT_12s0035g00620.t01 | Wine grape | nucleus | 17.71 | 16.58 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 14.29 | 16.23 |
Protein Annotations
| Gene3D:1.20.5.170 | EntrezGene:100247888 | wikigene:100247888 | MapMan:15.5.4.1 | ProteinID:CCB45138 | ProteinID:CCB45138.1 |
| ncoils:Coil | UniProt:F6GYV2 | EMBL:FN594974 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006810 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007231 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008272 | GO:GO:0009058 | GO:GO:0009294 | GO:GO:0009605 |
| GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009652 | GO:GO:0009970 | GO:GO:0009987 | GO:GO:0009991 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0043621 | GO:GO:0045596 | GO:GO:0051019 | GO:GO:0051170 |
| InterPro:IPR004827 | EntrezGene:LOC100247888 | wikigene:LOC100247888 | PFAM:PF07716 | PFscan:PS50217 | PANTHER:PTHR13690 |
| PANTHER:PTHR13690:SF86 | SMART:SM00338 | SUPFAM:SSF57959 | TIGR:TC57371 | UniParc:UPI00019859C1 | ArrayExpress:VIT_18s0076g00330 |
| EnsemblPlantsGene:VIT_18s0076g00330 | EnsemblPlants:VIT_18s0076g00330.t01 | unigene:Vvi.840 | RefSeq:XP_002266803 | RefSeq:XP_002266803.1 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:+:16209694..16218061
Molecular Weight (calculated)
38270.4 Da
IEP (calculated)
6.763
GRAVY (calculated)
-0.719
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHHFAGKPL TASPFGNRAD IDHMPDAPYR GAHHRRAQSE TFFRFSDDIL LDADADVDVD FNLDIISDNT NSGAAGVPMA VDSSKSEDSN GGYSASAKAK
101: SLDPINHFRS LSVDADFFEG LGFSPAATAA AGESSDGGGK ATQEKRVHHH RHSNSMDGST TSFEVESLIG SDGAKKAMGP DRLAELALID PKRAKRILAN
201: RQSAARSKER KIRYTNELER KVQTLQTEAT TLSAQVTMLQ RDTTGLTAEN KELKLRLQAM EQQASLREAL NEALREEVQR LKIATGQIPA VNGNSFNRGL
301: PPQFSSHPQA LHHFGAQQQQ QQLHMPQSST NNQSLNGQPQ PSFLDFNQRV
101: SLDPINHFRS LSVDADFFEG LGFSPAATAA AGESSDGGGK ATQEKRVHHH RHSNSMDGST TSFEVESLIG SDGAKKAMGP DRLAELALID PKRAKRILAN
201: RQSAARSKER KIRYTNELER KVQTLQTEAT TLSAQVTMLQ RDTTGLTAEN KELKLRLQAM EQQASLREAL NEALREEVQR LKIATGQIPA VNGNSFNRGL
301: PPQFSSHPQA LHHFGAQQQQ QQLHMPQSST NNQSLNGQPQ PSFLDFNQRV
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.