Factsheet for VIT_18s0001g13740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G109890.1	Barley	cytosol	27.27	58.06
TraesCS5A01G491600.1	Wheat	nucleus	57.58	29.69
TraesCS4D01G316900.1	Wheat	nucleus	56.82	28.96
GSMUA_Achr5P20200_001	Banana	nucleus	59.85	28.42
OQU92255	Sorghum	nucleus	62.88	27.21
Zm00001d048455_P001	Maize	nucleus	62.88	24.63
VIT_18s0076g00330.t01	Wine grape	nucleus	59.85	22.57
VIT_06s0004g08070.t01	Wine grape	plastid	58.33	22.51
TraesCS1D01G191000.1	Wheat	nucleus, plastid	63.64	21.76
VIT_13s0067g02900.t01	Wine grape	nucleus	59.09	21.73
TraesCS1A01G186000.1	Wheat	plastid	63.64	21.48
TraesCS1B01G193800.1	Wheat	nucleus	62.88	21.39
Zm00001d029711_P001	Maize	nucleus	63.64	21.16
Os10t0531900-01	Rice	nucleus	61.36	20.25
Zm00001d027461_P001	Maize	plastid	64.39	19.95
Os03t0127500-00	Rice	nucleus	62.12	19.25
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	61.36	19.1
KXG40277	Sorghum	nucleus	62.12	19.03
CDY12108	Canola	nucleus	60.61	18.78
TraesCS4B01G320400.1	Wheat	nucleus	56.82	18.75
CDX72732	Canola	nucleus	60.61	18.14
PGSC0003DMT400009538	Potato	nucleus	60.61	18.02
Zm00001d031723_P002	Maize	nucleus	62.88	17.85
Bra031172.1-P	Field mustard	nucleus	50.76	17.82
Zm00001d052725_P001	Maize	nucleus	62.88	17.81
CDX90298	Canola	nucleus	59.09	17.81
Solyc04g081190.2.1	Tomato	nucleus	59.85	17.79
CDY22407	Canola	nucleus	59.85	17.75
Bra010722.1-P	Field mustard	nucleus	59.85	17.75
CDX82008	Canola	nucleus	50.0	17.74
Bra033582.1-P	Field mustard	nucleus	59.85	17.71
Os08t0543900-00	Rice	nucleus	62.12	17.67
CDX99610	Canola	nucleus	59.09	17.65
CDY15909	Canola	plastid	59.09	17.57
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	60.61	17.17
TraesCS7A01G268700.1	Wheat	nucleus	60.61	17.13
TraesCS7D01G269300.1	Wheat	nucleus	61.36	17.12
GSMUA_Achr8P12090_001	Banana	nucleus	61.36	17.12
Bra030314.1-P	Field mustard	plastid	59.09	16.96
VIT_05s0102g01120.t01	Wine grape	nucleus	54.55	16.94
EES15257	Sorghum	nucleus	62.88	16.87
GSMUA_Achr3P12290_001	Banana	nucleus	62.12	16.4
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	36.36	16.27
VIT_19s0014g01780.t01	Wine grape	nucleus	37.12	15.86
KRH61066	Soybean	nucleus, plastid	60.61	15.59
AT2G21230.3	Thale cress	nucleus	59.09	14.86
AT4G38900.1	Thale cress	nucleus	60.61	14.47
KRH05913	Soybean	nucleus	59.09	14.1
VIT_03s0038g00860.t01	Wine grape	nucleus	71.21	13.91
KRH17396	Soybean	nucleus	58.33	13.77
VIT_18s0001g03010.t01	Wine grape	nucleus	26.52	12.87
VIT_13s0073g00430.t01	Wine grape	nucleus	24.24	10.39
VIT_12s0035g00620.t01	Wine grape	nucleus	28.03	9.89
KRH51734	Soybean	nucleus	21.97	7.23

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100264275	wikigene:100264275	MapMan:15.5.4.1	ProteinID:CCB46008	ProteinID:CCB46008.1
ncoils:Coil	UniProt:F6GZR6	EMBL:FN595227	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EntrezGene:LOC100264275	wikigene:LOC100264275
PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF76	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002109A64	ArrayExpress:VIT_18s0001g13740	EnsemblPlantsGene:VIT_18s0001g13740	EnsemblPlants:VIT_18s0001g13740.t01	RefSeq:XP_002280542	RefSeq:XP_002280542.1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:11745491..11746246

Molecular Weight (calculated)

14929.0 Da

IEP (calculated)

10.103

GRAVY (calculated)

-0.517

Length

132 amino acids

Sequence
(BLAST)

001: MGNEKLAEIA LVDPKRAKSR ILANRQSAAR SKERKVRYMA ELEHKVHTLQ TETTTLSHLL TLLQRDSAEL TSRNNELKLR IQAMEQEAQF RDALKEALTL
101: EVHRLQLLGT AEPSGGKVFF SSLCFVRDSG PN

Best Arabidopsis Sequence Match ( AT4G38900.2 )
(BLAST)

001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q9T0J7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.