Factsheet for VIT_18s0001g03010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00620.t01	Wine grape	nucleus	55.15	40.11
Solyc11g020950.1.1	Tomato	nucleus	46.32	38.65
PGSC0003DMT400024003	Potato	nucleus	48.16	37.75
Bra034913.1-P	Field mustard	nucleus	26.47	32.43
KXG23197	Sorghum	mitochondrion	41.18	31.02
Zm00001d041831_P001	Maize	mitochondrion	39.34	30.75
TraesCS4A01G204300.1	Wheat	nucleus	38.97	30.64
TraesCS4D01G105100.1	Wheat	mitochondrion	38.97	30.64
Zm00001d035240_P001	Maize	nucleus	25.37	30.53
Os11t0218000-01	Rice	nucleus	40.81	30.49
TraesCS4B01G108000.1	Wheat	nucleus	38.6	30.35
Os12t0194600-01	Rice	nucleus	40.81	30.08
GSMUA_Achr8P29390_001	Banana	nucleus	40.44	30.05
GSMUA_Achr9P00300_001	Banana	nucleus	41.18	29.79
AT1G35490.1	Thale cress	nucleus	32.35	29.33
KXG28232	Sorghum	mitochondrion	38.6	29.33
HORVU5Hr1G031130.2	Barley	mitochondrion	38.6	29.17
Zm00001d049135_P001	Maize	mitochondrion	36.03	28.08
CDY48939	Canola	nucleus	30.15	26.54
VIT_18s0001g13740.t01	Wine grape	nucleus	12.87	26.52
HORVU4Hr1G016340.4	Barley	nucleus, plastid	39.34	25.97
GSMUA_Achr3P02820_001	Banana	golgi	37.87	25.69
CDX80717	Canola	nucleus, plastid	30.15	25.62
VIT_19s0014g01780.t01	Wine grape	nucleus	26.84	23.62
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	24.63	22.71
VIT_13s0073g00430.t01	Wine grape	nucleus	18.38	16.23
VIT_06s0004g08070.t01	Wine grape	plastid	19.12	15.2
VIT_18s0076g00330.t01	Wine grape	nucleus	18.38	14.29
VIT_13s0067g02900.t01	Wine grape	nucleus	18.01	13.65
VIT_05s0102g01120.t01	Wine grape	nucleus	20.22	12.94
VIT_03s0038g00860.t01	Wine grape	nucleus	19.49	7.84

Protein Annotations

MapMan:15.5.4.1	ProteinID:CBI35539	ProteinID:CBI35539.3	ncoils:Coil	UniProt:D7TYG4	EMBL:FN596267
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045893	PANTHER:PTHR13301	PANTHER:PTHR13301:SF25	SUPFAM:SSF57959
UniParc:UPI0001BE4147	ArrayExpress:VIT_18s0001g03010	EnsemblPlantsGene:VIT_18s0001g03010	EnsemblPlants:VIT_18s0001g03010.t01	SEG:seg	:

Description

No Description!

Coordinates

chr18_random:-:3068050..3070292

Molecular Weight (calculated)

30940.8 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.992

Length

272 amino acids

Sequence
(BLAST)

001: MQRGHRRSAS DSLAYLGAVA KVSNTNEDHK FKNSFAWPSF GSLCNASTYT RPSSFDENQN RAWESSLNCL NYTSDLPLTR DQPNIINVQV SGSCAPPDQP
101: DGVPPIATKK QDCAESISHN QEDSSERSDS SSAQPSLSKN DAKRAKQQFA QRSRLRKLQY IAELEMSVQV LQAEGCEISA AVEYLDQHNL ILGMKNRALQ
201: QRLESSSQEY LIKQLEQDML EREIRRLQIL YQQQQQQQQQ QQQQQQQQQF SGHRRAKSRN LDSPFSNTSV KT

Best Arabidopsis Sequence Match ( AT1G58110.1 )
(BLAST)

001: MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYSEYIP TGLIGSRHGQ KLSNEKTHHQ RTSSESHLVE ELPFWLDDLL NEQPESPARK CGHRRSSSDS
101: YAYLDVANAT NISLTLQNDF SYRNTVLSTQ RGVQELDRNK NAQDAAFYSG ASFLKQKSRQ RDSLVATGAC PSWLPFAREN GGGKNLGALY MSQDATVISS
201: ERKNYAEPFS HDPKMLSSEE NNSNPSPVTY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ RNLILSMENK ALKKRLESIA
301: QEKLIKQLEQ EVLEKEIGRL RALYQQQQQT QKPSASRGRA TSKDLDSQFS SLSLNTKDSN CRRDSVSVMG QFHF

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4I9R1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.