CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010722.1-P	Field mustard	nucleus	98.4	96.85
CDY12108	Canola	nucleus	86.99	89.44
CDX72732	Canola	nucleus	75.57	75.06
CDY22407	Canola	nucleus	73.74	72.58
AT4G38900.1	Thale cress	nucleus	79.68	63.11
VIT_18s0001g13740.t01	Wine grape	nucleus	17.81	59.09
CDY15909	Canola	plastid	46.58	45.95
CDX99610	Canola	nucleus	45.43	45.02
CDY13830	Canola	nucleus, plastid	31.05	44.3
CDX82008	Canola	nucleus	34.7	40.86
Solyc04g081190.2.1	Tomato	nucleus	38.81	38.29
PGSC0003DMT400009538	Potato	nucleus	38.81	38.29
CDY48943	Canola	nucleus	21.0	38.17
CDY35020	Canola	nucleus	14.61	36.36
KRH61066	Soybean	nucleus, plastid	41.78	35.67
CDX93167	Canola	nucleus	26.94	34.4
KRH05913	Soybean	nucleus	43.15	34.18
CDY06974	Canola	nucleus	27.17	33.81
CDY23889	Canola	nucleus	26.94	33.24
KRH17396	Soybean	nucleus	41.78	32.74
CDX86512	Canola	nucleus	23.74	32.7
CDY19094	Canola	nucleus	23.74	32.7
CDX79976	Canola	nucleus	26.48	32.58
CDY15590	Canola	nucleus	23.52	32.09
CDY15560	Canola	nucleus	27.85	32.02
CDY06231	Canola	nucleus	23.29	31.38
CDX80722	Canola	nucleus	23.06	31.37
CDX86537	Canola	nucleus	28.08	31.3
KRH51734	Soybean	nucleus	28.31	30.92
CDY09952	Canola	nucleus	23.06	30.79
CDY30752	Canola	nucleus	22.83	30.3
CDY15381	Canola	nucleus	25.57	30.27
CDY24896	Canola	nucleus	23.29	30.09
CDY10170	Canola	nucleus	26.94	30.03
CDY10799	Canola	nucleus	25.34	29.92
CDY47713	Canola	nucleus	26.71	29.85
CDY56611	Canola	nucleus	24.89	29.62
CDY71925	Canola	nucleus	16.21	27.95
CDY07597	Canola	nucleus	21.0	27.54
CDX82009	Canola	plastid	19.86	22.72
CDY64520	Canola	nucleus, plastid	14.16	22.71
CDX71000	Canola	nucleus, plastid	14.38	22.58
CDY70502	Canola	nucleus	19.86	22.54
CDX79872	Canola	nucleus, plastid	14.38	22.5
CDY13828	Canola	plastid	19.86	22.48
CDX71974	Canola	nucleus, plastid	13.47	22.1
CDY06053	Canola	nucleus	14.16	21.83
CDY22561	Canola	nucleus, plastid	13.24	21.64
CDY35379	Canola	nucleus, plastid	12.79	20.9
CDX98266	Canola	nucleus, plastid	14.16	20.81
CDY56238	Canola	extracellular	5.94	19.4
CDY13829	Canola	cytosol	0.46	18.18
CDY46864	Canola	nucleus	13.01	17.07
CDY23807	Canola	nucleus	13.01	16.96
CDY39913	Canola	nucleus	13.93	16.44
CDY29162	Canola	nucleus	13.7	16.04
CDY48939	Canola	nucleus	10.73	15.21
CDY44883	Canola	mitochondrion, nucleus	10.5	15.03
CDX70198	Canola	mitochondrion, nucleus	10.5	14.98
CDX80717	Canola	nucleus, plastid	10.73	14.69

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078DSY3	EnsemblPlants:CDX90298	ProteinID:CDX90298	ProteinID:CDX90298.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00150876001	InterPro:IPR004827	PFAM:PF00170
PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF76	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EEAEDC
InterPro:bZIP	SEG:seg	:	:	:	:

Description

BnaA08g16860D

Coordinates

chrLK031862:-:1133776..1135830

Molecular Weight (calculated)

48666.5 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.961

Length

438 amino acids

Sequence
(BLAST)

001: MGDTDTDMIH RLHSPFGKQP QQLQFSSDSA KRVGVPPTSP YSQIPTTRPQ PHGATHSRSI SQPSSFFSFD SLPPLSPSPS NNNNNNNQPS SLLPPPPFTR
101: CNSDSSRVVL PPRKSHRRSN SDIPTSIPPR PLERGESPDW SNHTPPFVKK ESGEDMDDLF SAYMNLENID ALNSSEADME SSRASGTKTN GSDDTEGESS
201: SVNYESGGDR NNSLKRRAGG EGDIAPTTRH YRSVSVDSCF MEKMSFGEDS LKPPPTNSVD GGIEFKNGEF NAAEMKKIMA NDKLAEMAVS DPKRVKRILA
301: NRQSAARSKE RKMRYIVELE HKVQTLQTEA TTLSAQFTLL QRDMMGLTNQ NNELKFRLQS MEHQAQLRDA LSEALNGEVQ RLKLAIGETS HNESDRSKMQ
401: SLNAEMFQQL HISQLTQQPQ SQQNRNGTMS AKPESNEL

Best Arabidopsis Sequence Match ( AT4G38900.3 )
(BLAST)

001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE

Arabidopsis Description

Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q9T0J7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.