CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68078
CDX75801
CDX82454
CDX97626
CDX98522
CDY20096
CDY32326
CDY48548

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04840.1	CDX68078	AT1G76920.1	21798944
AT5G04840.1	CDY48548	AT1G76920.1	21798944
AT5G04840.1	CDX75801	AT3G15000.1	21798944
AT5G04840.1	CDX82454	AT3G15000.1	21798944
AT5G04840.1	CDX97626	AT3G15000.1	21798944
AT5G04840.1	CDX98522	AT3G15000.1	21798944
AT5G04840.1	CDY20096	AT3G15000.1	21798944
AT5G04840.1	CDY32326	AT3G15000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009426.1-P	Field mustard	mitochondrion, nucleus	98.7	98.7
CDY44883	Canola	mitochondrion, nucleus	96.09	96.41
AT5G04840.1	Thale cress	plastid	80.46	80.46
VIT_13s0073g00430.t01	Wine grape	nucleus	45.93	45.78
PGSC0003DMT400005064	Potato	nucleus	43.97	44.12
Solyc11g006490.1.1	Tomato	nucleus	43.0	43.0
GSMUA_Achr3P19190_001	Banana	nucleus	37.46	33.72
TraesCS6D01G187300.1	Wheat	nucleus	34.85	33.13
HORVU6Hr1G051110.4	Barley	nucleus	34.53	32.92
TraesCS6B01G222800.1	Wheat	nucleus	34.53	32.82
TraesCS6A01G203200.1	Wheat	nucleus	34.53	32.82
Zm00001d016732_P003	Maize	nucleus	34.2	32.81
Os02t0538900-01	Rice	mitochondrion, nucleus	34.2	32.21
EES06922	Sorghum	nucleus	33.88	32.2
Zm00001d050669_P001	Maize	nucleus	32.9	31.37
GSMUA_Achr10P...	Banana	nucleus	30.29	28.44
GSMUA_Achr5P17400_001	Banana	nucleus	34.53	27.39
CDY64520	Canola	nucleus, plastid	20.85	23.44
CDX71000	Canola	nucleus, plastid	20.85	22.94
CDX79872	Canola	nucleus, plastid	20.85	22.86
CDY06053	Canola	nucleus	20.2	21.83
CDY56238	Canola	extracellular	9.45	21.64
CDY22561	Canola	nucleus, plastid	18.89	21.64
CDY46864	Canola	nucleus	23.45	21.56
CDX98266	Canola	nucleus, plastid	20.85	21.48
CDY23807	Canola	nucleus	23.45	21.43
CDY35379	Canola	nucleus, plastid	18.57	21.27
CDX71974	Canola	nucleus, plastid	17.92	20.6
CDY48939	Canola	nucleus	20.2	20.06
CDX80717	Canola	nucleus, plastid	20.52	19.69
CDY39913	Canola	nucleus	23.45	19.41
CDY29162	Canola	nucleus	23.45	19.25
CDY35020	Canola	nucleus	10.1	17.61
CDY48943	Canola	nucleus	10.75	13.69
CDY19094	Canola	nucleus	14.01	13.52
CDY13830	Canola	nucleus, plastid	13.03	13.03
CDY47713	Canola	nucleus	16.61	13.01
CDX86537	Canola	nucleus	16.61	12.98
CDX86512	Canola	nucleus	13.36	12.89
CDY15560	Canola	nucleus	15.96	12.86
CDY15590	Canola	nucleus	13.36	12.77
CDY10170	Canola	nucleus	16.29	12.72
CDY06231	Canola	nucleus	13.36	12.62
CDY09952	Canola	nucleus	13.36	12.5
CDY24896	Canola	nucleus	13.68	12.39
CDY56611	Canola	nucleus	14.66	12.23
CDY10799	Canola	nucleus	14.66	12.13
CDX99610	Canola	nucleus	17.26	11.99
CDX93167	Canola	nucleus	13.36	11.95
CDY15909	Canola	plastid	17.26	11.94
CDY06974	Canola	nucleus	13.68	11.93
CDY15381	Canola	nucleus	14.33	11.89
CDX82008	Canola	nucleus	14.33	11.83
CDX80722	Canola	nucleus	12.38	11.8
CDX79976	Canola	nucleus	13.68	11.8
CDY23889	Canola	nucleus	13.03	11.27
CDY30752	Canola	nucleus	12.05	11.21
CDY71925	Canola	nucleus	9.12	11.02
CDY12108	Canola	nucleus	14.98	10.8
CDY22407	Canola	nucleus	15.64	10.79
CDX90298	Canola	nucleus	14.98	10.5
CDY07597	Canola	nucleus	11.4	10.48
CDX72732	Canola	nucleus	14.98	10.43
CDX82009	Canola	plastid	12.05	9.66
CDY70502	Canola	nucleus	12.05	9.59
CDY13828	Canola	plastid	12.05	9.56
CDY13829	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX70198	EnsemblPlantsGene:GSBRNA2T00136321001	ncoils:Coil	PANTHER:PTHR22952	PANTHER:PTHR22952:SF251	ProteinID:CDX70198
ProteinID:CDX70198.1	SEG:seg	UniParc:UPI0004EDB4C0	MapMan:15.5.4.1	:	:

Description

BnaA10g25470D

Coordinates

chrLK031790:-:3518727..3521258

Molecular Weight (calculated)

33553.0 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.691

Length

307 amino acids

Sequence
(BLAST)

001: MSRPGQLPPR CPIPKKLSLN PYADTFYSSS SPVESYISHH HKSSSPAQDS TLEEQPAWLD ELLGDKTDCG GPSPLRRSAS DSVVLLGDIS ADFAGFNQSE
101: DEESLSSEAC GELESACVYG PNSPRAKNSS SFSDSTIASA FSEYGSQKAP QNADDTVKGS ICHPHEAENA CGSNAKRNPG QRSRVRKLQY IAELERRVSM
201: LQAVEADLSV RVASLLQTRA TLSLENSQMK QQMAILKQDK LIREGEYLLL KKEAQRLNSR LRNFGSNNNN NNNRLARSYS AGSSIGPRTG SSPLDWNLLD
301: LTKLNLN

Best Arabidopsis Sequence Match ( AT5G04840.1 )
(BLAST)

001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN

Arabidopsis Description

At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.