Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g071130.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04840.1 | Solyc04g071130.1.1 | AT1G76920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400005064 | Potato | nucleus | 96.09 | 96.41 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 55.05 | 54.87 |
| AT5G04840.1 | Thale cress | plastid | 45.93 | 45.93 |
| CDX70198 | Canola | mitochondrion, nucleus | 43.0 | 43.0 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 42.67 | 42.67 |
| CDY44883 | Canola | mitochondrion, nucleus | 42.02 | 42.16 |
| EES06922 | Sorghum | nucleus | 38.76 | 36.84 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 38.76 | 36.84 |
| Zm00001d016732_P003 | Maize | nucleus | 38.11 | 36.56 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 38.44 | 36.53 |
| Zm00001d050669_P001 | Maize | nucleus | 37.78 | 36.02 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 37.78 | 35.91 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 38.11 | 35.89 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 37.46 | 35.71 |
| GSMUA_Achr3P19190_001 | Banana | nucleus | 38.11 | 34.31 |
| GSMUA_Achr10P... | Banana | nucleus | 33.22 | 31.19 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 38.11 | 30.23 |
| Solyc07g053450.2.1 | Tomato | nucleus | 24.43 | 26.41 |
| Solyc11g020950.1.1 | Tomato | nucleus | 24.76 | 23.31 |
| Solyc12g010800.1.1 | Tomato | nucleus | 23.13 | 23.2 |
| Solyc07g062710.2.1 | Tomato | nucleus, plastid | 21.5 | 21.85 |
| Solyc10g044830.1.1 | Tomato | nucleus | 15.64 | 19.43 |
| Solyc06g060490.2.1 | Tomato | nucleus | 15.31 | 16.97 |
| Solyc04g071160.2.1 | Tomato | nucleus | 15.96 | 14.37 |
| Solyc06g049040.2.1 | Tomato | nucleus | 14.66 | 13.6 |
| Solyc06g048630.2.1 | Tomato | nucleus | 14.98 | 13.18 |
| Solyc06g053350.2.1 | Tomato | plastid | 18.57 | 13.13 |
| Solyc04g081190.2.1 | Tomato | nucleus | 18.89 | 13.06 |
| Solyc01g110480.2.1 | Tomato | nucleus | 19.87 | 10.48 |
Protein Annotations
| EnsemblPlants:Solyc11g006490.1.1 | EnsemblPlantsGene:Solyc11g006490.1 | ncoils:Coil | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF251 | SEG:seg |
| UniParc:UPI0002769DD5 | UniProt:K4D4R2 | MapMan:15.5.4.1 | : | : | : |
Description
No Description!
Coordinates
chr11:+:1168446..1172236
Molecular Weight (calculated)
34164.3 Da
IEP (calculated)
7.503
GRAVY (calculated)
-0.589
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRQAHLPPR CPFQKKPLTC PVQDPFSPPS HQHNLLPPRH QKSISQSSIL EEQPAWLDEL LSDSRSNSSG IMHRRSASDS LTILDGLVSF EGFDKFDETE
101: SNASCESDSS SKNNCIYGPN SPRGKSNITF AENAIVSALS EYVSPNPLQY LDRCVSVSGA AQSELVGNAS GAADDVSADA KPMKRHPGQR SRVRKLQYIA
201: ELERTVNTYE AIESDLTAKV ASLLQQRVTL LMENRELKQQ MLRLQQEKVI VDAQYRSLRR ELERLKCLAH SRNGGKLSTN FRLSSAVEMT GSDAAWQMLD
301: FGKLDLN
101: SNASCESDSS SKNNCIYGPN SPRGKSNITF AENAIVSALS EYVSPNPLQY LDRCVSVSGA AQSELVGNAS GAADDVSADA KPMKRHPGQR SRVRKLQYIA
201: ELERTVNTYE AIESDLTAKV ASLLQQRVTL LMENRELKQQ MLRLQQEKVI VDAQYRSLRR ELERLKCLAH SRNGGKLSTN FRLSSAVEMT GSDAAWQMLD
301: FGKLDLN
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Arabidopsis Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.