Factsheet for Bra009426.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001578.1-P
Bra003700.1-P
Bra021584.1-P
Bra027285.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04840.1	Bra003700.1-P	AT1G76920.1	21798944
AT5G04840.1	Bra001578.1-P	AT3G15000.1	21798944
AT5G04840.1	Bra021584.1-P	AT3G15000.1	21798944
AT5G04840.1	Bra027285.1-P	AT3G15000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70198	Canola	mitochondrion, nucleus	98.7	98.7
CDY44883	Canola	mitochondrion, nucleus	95.44	95.75
AT5G04840.1	Thale cress	plastid	80.46	80.46
VIT_13s0073g00430.t01	Wine grape	nucleus	46.25	46.1
PGSC0003DMT400005064	Potato	nucleus	43.65	43.79
Solyc11g006490.1.1	Tomato	nucleus	42.67	42.67
GSMUA_Achr3P19190_001	Banana	nucleus	37.46	33.72
TraesCS6D01G187300.1	Wheat	nucleus	34.53	32.82
HORVU6Hr1G051110.4	Barley	nucleus	34.2	32.61
TraesCS6B01G222800.1	Wheat	nucleus	34.2	32.51
TraesCS6A01G203200.1	Wheat	nucleus	34.2	32.51
Zm00001d016732_P003	Maize	nucleus	33.88	32.5
Os02t0538900-01	Rice	mitochondrion, nucleus	33.88	31.9
EES06922	Sorghum	nucleus	33.55	31.89
Zm00001d050669_P001	Maize	nucleus	32.57	31.06
GSMUA_Achr10P...	Banana	nucleus	30.29	28.44
GSMUA_Achr5P17400_001	Banana	nucleus	34.53	27.39
Bra035464.1-P	Field mustard	nucleus	15.31	26.7
Bra004689.1-P	Field mustard	nucleus, plastid	21.17	21.24
Bra003320.1-P	Field mustard	nucleus	20.52	20.72
Bra027885.1-P	Field mustard	nucleus	23.78	19.57
Bra007380.1-P	Field mustard	nucleus	19.87	19.18
Bra000256.1-P	Field mustard	nucleus, plastid	20.52	17.4
Bra034913.1-P	Field mustard	nucleus	12.38	17.12
Bra015471.1-P	Field mustard	nucleus	16.61	13.01
Bra030637.1-P	Field mustard	nucleus	15.96	12.86
Bra030663.1-P	Field mustard	nucleus	13.36	12.81
Bra021735.1-P	Field mustard	nucleus	14.01	12.68
Bra031541.1-P	Field mustard	nucleus	13.36	12.65
Bra034916.1-P	Field mustard	nucleus, plastid	10.42	12.17
Bra018250.1-P	Field mustard	nucleus	14.66	12.03
Bra031172.1-P	Field mustard	nucleus	14.66	11.97
Bra004582.1-P	Field mustard	nucleus	13.68	11.8
Bra030314.1-P	Field mustard	plastid	17.59	11.74
Bra016980.1-P	Field mustard	nucleus	13.03	11.7
Bra032191.1-P	Field mustard	nucleus	12.38	11.52
Bra010722.1-P	Field mustard	nucleus	15.31	10.56
Bra033582.1-P	Field mustard	nucleus	15.31	10.54
Bra000195.1-P	Field mustard	nucleus	11.4	10.48
Bra031173.1-P	Field mustard	plastid	12.05	9.56

Protein Annotations

EnsemblPlants:Bra009426.1	EnsemblPlants:Bra009426.1-P	EnsemblPlantsGene:Bra009426	ncoils:Coil	PANTHER:PTHR22952	PANTHER:PTHR22952:SF251
SEG:seg	UniParc:UPI000254778B	UniProt:M4CYX9	MapMan:15.5.4.1	:	:

Description

AT5G04840 (E=6e-113) | bZIP protein

Coordinates

chrA10:-:16594417..16595964

Molecular Weight (calculated)

33550.0 Da

IEP (calculated)

7.422

GRAVY (calculated)

-0.682

Length

307 amino acids

Sequence
(BLAST)

001: MSRPAQLPPR CPIPKKLSLN PYADTFYSSS SPVESYIGHH HKSSSPAQDS TLEEQPAWLD ELLGDKTDCG GPSPLRRSAS DSVVLLGDIS ADFAGFNQSE
101: DEESLTSEAC GELESACVYG PNSPRAKNSS SFSDSTIASA FSEYGSQKAP QNADDTVKGS ICHPHEAENA CGSNAKRNPG QRSRVRKLQY IAELERRVSM
201: LQAVEANLSV RVASLLQTRA TLSLENSQMK QQMAILKQDK LIREGEYLLL KKEAQRLNSR LRNFGSNNNN NNNRLARSYS AGSSIGPRTG SSPLDWNLLD
301: LTKLNLN

Best Arabidopsis Sequence Match ( AT5G04840.1 )
(BLAST)

001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN

Arabidopsis Description

At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.