Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P08230_001 | |
| GSMUA_Achr8P07870_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P19190_001 | Banana | nucleus | 64.83 | 62.17 |
| GSMUA_Achr5P17400_001 | Banana | nucleus | 61.16 | 51.68 |
| EES06922 | Sorghum | nucleus | 45.26 | 45.82 |
| Os02t0538900-01 | Rice | mitochondrion, nucleus | 45.57 | 45.71 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 44.95 | 45.51 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 44.65 | 45.34 |
| TraesCS6B01G222800.1 | Wheat | nucleus | 44.65 | 45.2 |
| TraesCS6A01G203200.1 | Wheat | nucleus | 44.65 | 45.2 |
| Zm00001d016732_P003 | Maize | nucleus | 44.04 | 45.0 |
| Zm00001d050669_P001 | Maize | nucleus | 43.43 | 44.1 |
| VIT_13s0073g00430.t01 | Wine grape | nucleus | 33.64 | 35.71 |
| PGSC0003DMT400005064 | Potato | nucleus | 31.5 | 33.66 |
| Solyc11g006490.1.1 | Tomato | nucleus | 31.19 | 33.22 |
| AT5G04840.1 | Thale cress | plastid | 30.89 | 32.9 |
| CDY44883 | Canola | mitochondrion, nucleus | 28.44 | 30.39 |
| Bra009426.1-P | Field mustard | mitochondrion, nucleus | 28.44 | 30.29 |
| CDX70198 | Canola | mitochondrion, nucleus | 28.44 | 30.29 |
| GSMUA_Achr3P03550_001 | Banana | nucleus | 18.35 | 25.86 |
| GSMUA_Achr3P31390_001 | Banana | nucleus | 16.21 | 23.77 |
| GSMUA_Achr9P06540_001 | Banana | nucleus | 17.43 | 23.36 |
| GSMUA_Achr6P26930_001 | Banana | nucleus | 18.04 | 23.32 |
| GSMUA_Achr7P25310_001 | Banana | nucleus | 18.96 | 22.46 |
| GSMUA_Achr4P10560_001 | Banana | nucleus | 17.74 | 21.4 |
| GSMUA_Achr8P29390_001 | Banana | nucleus | 23.55 | 21.04 |
| GSMUA_Achr9P00300_001 | Banana | nucleus | 24.16 | 21.01 |
| GSMUA_Achr3P02820_001 | Banana | golgi | 22.63 | 18.45 |
| GSMUA_Achr11P... | Banana | nucleus | 14.98 | 15.71 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 9.17 | 15.0 |
| GSMUA_Achr2P18830_001 | Banana | nucleus | 11.62 | 13.19 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 11.31 | 13.03 |
| GSMUA_Achr6P32530_001 | Banana | nucleus | 12.54 | 12.85 |
| GSMUA_Achr11P... | Banana | nucleus | 14.68 | 12.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.15 | 12.43 |
| GSMUA_Achr5P25700_001 | Banana | nucleus | 13.46 | 12.39 |
| GSMUA_Achr5P29650_001 | Banana | nucleus | 14.07 | 12.07 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 10.7 | 11.95 |
| GSMUA_Achr5P20200_001 | Banana | nucleus | 9.79 | 11.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.76 | 11.28 |
| GSMUA_Achr10P... | Banana | nucleus | 10.7 | 11.18 |
| GSMUA_Achr11P... | Banana | nucleus | 14.98 | 10.94 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 14.07 | 10.85 |
| GSMUA_Achr3P12290_001 | Banana | nucleus | 16.21 | 10.6 |
| GSMUA_Achr1P08090_001 | Banana | nucleus, plastid | 14.98 | 10.52 |
| GSMUA_Achr10P... | Banana | nucleus | 10.7 | 10.42 |
| GSMUA_Achr8P12090_001 | Banana | nucleus | 14.07 | 9.73 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P09370_001 | EnsemblPlants:GSMUA_Achr10T09370_001 | EnsemblPlantsGene:GSMUA_Achr10G09370_001 | ncoils:Coil | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF251 |
| SEG:seg | UniParc:UPI000295E8B9 | UniProt:M0RGR3 | MapMan:15.5.4.1 | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G09370_001]
Coordinates
chr10:-:19245501..19248548
Molecular Weight (calculated)
36340.8 Da
IEP (calculated)
5.115
GRAVY (calculated)
-0.510
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDTYVSDNR GLICRASDST PQTTQNDDNL CVQYPGFSSD VALLDEQPLL LDDLLTEPEI SPGGVSLRRS ASDPLAFLEV ASSLHGLSPV KEEDALSDGV
101: LHESLESEGT SEVGSGFEAG NCVYGRNSPR QRSKLTDSES WMVSSLLENV PSNPQQYLTM DYPSTYVVNE PNGKEVDCVP SGYLDSEKIS KRCSGQRSRV
201: RKLQHIVQLE ITIDILQTLG TDLVARVASL FQYHLALSVG NKNLRQQIAS LRQEKIIKDG ERQSLKNEAE RLKMMLRHHQ RSKSMASCFE KGTYVADPST
301: LNWQMLDLEN LTLGGSQVPL KHSLRHR
101: LHESLESEGT SEVGSGFEAG NCVYGRNSPR QRSKLTDSES WMVSSLLENV PSNPQQYLTM DYPSTYVVNE PNGKEVDCVP SGYLDSEKIS KRCSGQRSRV
201: RKLQHIVQLE ITIDILQTLG TDLVARVASL FQYHLALSVG NKNLRQQIAS LRQEKIIKDG ERQSLKNEAE RLKMMLRHHQ RSKSMASCFE KGTYVADPST
301: LNWQMLDLEN LTLGGSQVPL KHSLRHR
001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN
Arabidopsis Description
At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.