Factsheet for GSMUA_Achr6P18130_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P19170_001
GSMUA_Achr6P13040_001
GSMUA_Achr6P18130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	GSMUA_Achr10P...	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr10P...	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr3P19170_001	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr6P13040_001	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr6P18130_001	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19170_001	Banana	nucleus	57.0	83.5
GSMUA_Achr10P...	Banana	nucleus	83.96	78.59
GSMUA_Achr6P13040_001	Banana	nucleus	62.12	64.08
Os12t0162500-01	Rice	plasma membrane	66.55	59.45
TraesCS5B01G124200.1	Wheat	nucleus	56.66	59.29
Zm00001d053162_P003	Maize	nucleus	67.24	58.28
HORVU4Hr1G020540.1	Barley	nucleus	63.82	57.89
EES08023	Sorghum	nucleus	66.21	57.06
TraesCS4D01G110900.1	Wheat	nucleus	63.82	56.67
TraesCS4B01G113400.1	Wheat	nucleus	63.48	56.53
Zm00001d004857_P001	Maize	nucleus	67.24	56.29
TraesCS4A01G209900.1	Wheat	nucleus	63.14	55.89
TraesCS5D01G132300.1	Wheat	nucleus	63.14	55.72
TraesCS5A01G124600.1	Wheat	nucleus	62.46	55.12
Zm00001d041920_P001	Maize	nucleus	60.07	54.83
GSMUA_Achr10P...	Banana	nucleus	62.46	54.46
EES15709	Sorghum	nucleus	64.85	54.44
Os11t0160500-01	Rice	nucleus, plasma membrane	41.98	52.12
HORVU5Hr1G039870.5	Barley	nucleus, plastid	61.43	50.42
Solyc06g060490.2.1	Tomato	nucleus	47.1	49.82
Zm00001d023507_P001	Maize	nucleus, plastid	63.48	46.73
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	40.96	45.98
PGSC0003DMT400045314	Potato	nucleus	49.83	44.79
VIT_18s0076g00330.t01	Wine grape	nucleus	53.24	44.57
KRH70316	Soybean	nucleus	50.17	44.55
CDY48943	Canola	nucleus	36.52	44.4
Solyc04g071160.2.1	Tomato	nucleus	48.81	41.94
PGSC0003DMT400002100	Potato	nucleus	48.12	41.47
Bra034916.1-P	Field mustard	nucleus, plastid	37.2	41.44
Bra032191.1-P	Field mustard	nucleus	45.05	40.0
CDY30752	Canola	nucleus	45.05	40.0
CDX80722	Canola	nucleus	42.66	38.82
GSMUA_Achr6P32530_001	Banana	nucleus	41.3	37.93
AT1G43700.1	Thale cress	nucleus	43.69	37.54
GSMUA_Achr2P18830_001	Banana	nucleus	36.86	37.5
CDY71925	Canola	nucleus	31.74	36.61
GSMUA_Achr5P25700_001	Banana	nucleus	41.98	34.65
GSMUA_Achr11P...	Banana	nucleus	36.86	34.62
GSMUA_AchrUn_...	Banana	nucleus	40.27	34.1
GSMUA_Achr11P...	Banana	nucleus	43.34	33.96
GSMUA_AchrUn_...	Banana	nucleus	45.39	33.33
KRH08713	Soybean	nucleus	46.76	32.16
GSMUA_Achr5P20200_001	Banana	nucleus	30.38	32.01
GSMUA_Achr11P...	Banana	nucleus	46.08	30.13
GSMUA_Achr5P29650_001	Banana	nucleus	38.23	29.4
GSMUA_Achr3P03550_001	Banana	nucleus	20.14	25.43
GSMUA_Achr9P06540_001	Banana	nucleus	20.82	25.0
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	35.49	24.53
GSMUA_Achr6P26930_001	Banana	nucleus	20.48	23.72
GSMUA_Achr3P31390_001	Banana	nucleus	17.75	23.32
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	36.86	23.18
GSMUA_Achr3P12290_001	Banana	nucleus	37.54	22.0
GSMUA_Achr8P12090_001	Banana	nucleus	34.81	21.56
GSMUA_Achr7P25310_001	Banana	nucleus	20.14	21.38
GSMUA_Achr4P10560_001	Banana	nucleus	19.11	20.66
GSMUA_Achr9P00300_001	Banana	nucleus	20.82	16.22
GSMUA_Achr8P29390_001	Banana	nucleus	19.45	15.57
GSMUA_Achr3P02820_001	Banana	golgi	18.77	13.72
GSMUA_Achr3P19190_001	Banana	nucleus	13.99	12.02
GSMUA_Achr10P...	Banana	nucleus	11.95	10.7
GSMUA_Achr5P17400_001	Banana	nucleus	13.65	10.34

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G18130_001
EnsemblPlants:GSMUA_Achr6P18130_001	EnsemblPlants:GSMUA_Achr6T18130_001	InterPro:IPR004827	UniProt:M0T811	PFAM:PF00170	PFscan:PS50217
PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002969716	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

bZIP transcription factor domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G18130_001]

Coordinates

chr6:+:12195538..12199943

Molecular Weight (calculated)

32315.9 Da

IEP (calculated)

7.572

GRAVY (calculated)

-0.780

Length

293 amino acids

Sequence
(BLAST)

001: MEPNGAPPGQ ATAGHRFGQI PPPNPRGGGG GHRRALSETV LRLPDDLLFD TDPDFGISDI DFPSLSDDNL TVPGAHLRSL SQERRGHHRR SGSMDGSFSP
101: FEGDSAATLS DYAKKAMTAD KLAELALIDP RRAKRHHLSI LANRQSAARS KERKIRYTNE LERKVQTLQT EATTLSAQLT LLQRDTTDLT AENRELKLRL
201: QAMEQQAQLH DALNDALREE VQRLKIATGQ LPSANGNPFN GGLQHSVSNY YAHPQQLPPQ SLRHGQHLHP SQMQISSNGQ SLVHSPSDPM DFM

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.