Factsheet for GSMUA_Achr3P19170_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P19170_001
GSMUA_Achr6P13040_001
GSMUA_Achr6P18130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	GSMUA_Achr10P...	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr10P...	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr3P19170_001	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr6P13040_001	AT1G43700.1	15824315
AT1G43700.1	GSMUA_Achr6P18130_001	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18130_001	Banana	nucleus	83.5	57.0
GSMUA_Achr10P...	Banana	nucleus	83.0	53.04
GSMUA_Achr6P13040_001	Banana	nucleus	63.0	44.37
Os12t0162500-01	Rice	plasma membrane	72.5	44.21
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	54.5	41.76
Zm00001d041920_P001	Maize	nucleus	66.5	41.43
TraesCS5B01G124200.1	Wheat	nucleus	57.0	40.71
Zm00001d053162_P003	Maize	nucleus	68.5	40.53
TraesCS5D01G132300.1	Wheat	nucleus	67.0	40.36
HORVU4Hr1G020540.1	Barley	nucleus	65.0	40.25
EES15709	Sorghum	nucleus	70.0	40.11
TraesCS5A01G124600.1	Wheat	nucleus	66.5	40.06
EES08023	Sorghum	nucleus	68.0	40.0
TraesCS4D01G110900.1	Wheat	nucleus	66.0	40.0
GSMUA_Achr10P...	Banana	nucleus	67.0	39.88
TraesCS4B01G113400.1	Wheat	nucleus	65.5	39.82
TraesCS4A01G209900.1	Wheat	nucleus	65.5	39.58
Zm00001d004857_P001	Maize	nucleus	69.0	39.43
CDY48943	Canola	nucleus	47.0	39.0
Solyc06g060490.2.1	Tomato	nucleus	52.0	37.55
Bra034916.1-P	Field mustard	nucleus, plastid	48.5	36.88
HORVU5Hr1G039870.5	Barley	nucleus, plastid	65.5	36.69
VIT_18s0076g00330.t01	Wine grape	nucleus	63.0	36.0
PGSC0003DMT400045314	Potato	nucleus	58.0	35.58
Zm00001d023507_P001	Maize	nucleus, plastid	69.5	34.92
GSMUA_Achr2P18830_001	Banana	nucleus	49.5	34.38
KRH70316	Soybean	nucleus	54.0	32.73
Solyc04g071160.2.1	Tomato	nucleus	55.0	32.26
PGSC0003DMT400002100	Potato	nucleus	54.0	31.76
Bra032191.1-P	Field mustard	nucleus	50.5	30.61
CDY30752	Canola	nucleus	50.5	30.61
CDX80722	Canola	nucleus	48.5	30.12
GSMUA_Achr6P32530_001	Banana	nucleus	47.5	29.78
GSMUA_Achr5P20200_001	Banana	nucleus	41.0	29.5
AT1G43700.1	Thale cress	nucleus	48.5	28.45
Os11t0160500-01	Rice	nucleus, plasma membrane	33.5	28.39
GSMUA_AchrUn_...	Banana	nucleus	47.5	27.46
GSMUA_Achr11P...	Banana	nucleus	42.5	27.24
GSMUA_Achr5P25700_001	Banana	nucleus	47.0	26.48
GSMUA_Achr11P...	Banana	nucleus	49.0	26.2
GSMUA_AchrUn_...	Banana	nucleus	52.0	26.07
KRH08713	Soybean	nucleus	51.5	24.18
GSMUA_Achr5P29650_001	Banana	nucleus	44.5	23.36
CDY71925	Canola	nucleus	29.5	23.23
GSMUA_Achr11P...	Banana	nucleus	52.0	23.21
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	42.0	19.81
GSMUA_Achr9P06540_001	Banana	nucleus	24.0	19.67
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	45.5	19.53
GSMUA_Achr3P31390_001	Banana	nucleus	21.5	19.28
GSMUA_Achr3P03550_001	Banana	nucleus	22.0	18.97
GSMUA_Achr6P26930_001	Banana	nucleus	23.5	18.58
GSMUA_Achr3P12290_001	Banana	nucleus	46.0	18.4
GSMUA_Achr8P12090_001	Banana	nucleus	42.5	17.97
GSMUA_Achr4P10560_001	Banana	nucleus	22.5	16.61
GSMUA_Achr7P25310_001	Banana	nucleus	22.0	15.94
GSMUA_Achr9P00300_001	Banana	nucleus	22.0	11.7
GSMUA_Achr8P29390_001	Banana	nucleus	20.5	11.2
GSMUA_Achr3P19190_001	Banana	nucleus	17.5	10.26
GSMUA_Achr3P02820_001	Banana	golgi	20.5	10.22
GSMUA_Achr10P...	Banana	nucleus	15.0	9.17
GSMUA_Achr5P17400_001	Banana	nucleus	16.0	8.27

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G19170_001
EnsemblPlants:GSMUA_Achr3P19170_001	EnsemblPlants:GSMUA_Achr3T19170_001	InterPro:IPR004827	UniProt:M0SFY3	PFAM:PF00170	PFscan:PS50217
PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002957E7C	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

Transcription factor RF2b [Source:GMGC_GENE;Acc:GSMUA_Achr3G19170_001]

Coordinates

chr3:+:20540633..20544490

Molecular Weight (calculated)

22239.2 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.695

Length

200 amino acids

Sequence
(BLAST)

001: MDGSISSFEG ESGASLSDYA KKAMTADKLA EFFRFISLIS PCMCSMILAN RQSAARSKER KIRYTNELER KVQTLQTEAT TLSAQLTLLQ RDTTDLTAEN
101: RELKLRLQAM EQQAQLRDAL NEALREEVQR LKIATGQLPN ANGNPFNGGL RQSVSNYYHP QQSPPPSGRQ AHHLHPSQAQ SSSNGQSVSV HSPNDPMDFM

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.