Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43700.1 | KRH08713 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | KRH70316 | AT1G43700.1 | 15824315 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH08713 | Soybean | nucleus | 85.15 | 65.96 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 44.55 | 56.32 |
| Solyc06g060490.2.1 | Tomato | nucleus | 47.27 | 56.32 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 32.73 | 54.0 |
| CDY48943 | Canola | nucleus | 38.18 | 52.28 |
| PGSC0003DMT400045314 | Potato | nucleus | 51.21 | 51.84 |
| PGSC0003DMT400002100 | Potato | nucleus | 53.33 | 51.76 |
| Solyc04g071160.2.1 | Tomato | nucleus | 53.03 | 51.32 |
| Os11t0160500-01 | Rice | nucleus, plasma membrane | 36.36 | 50.85 |
| TraesCS5B01G124200.1 | Wheat | nucleus | 42.73 | 50.36 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 53.33 | 50.29 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 44.55 | 50.17 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 39.39 | 49.43 |
| CDY30752 | Canola | nucleus | 49.39 | 49.39 |
| Bra032191.1-P | Field mustard | nucleus | 49.39 | 49.39 |
| CDY71925 | Canola | nucleus | 37.58 | 48.82 |
| CDX80722 | Canola | nucleus | 47.58 | 48.76 |
| EES08023 | Sorghum | nucleus | 49.39 | 47.94 |
| Zm00001d053162_P003 | Maize | nucleus | 48.79 | 47.63 |
| AT1G43700.1 | Thale cress | nucleus | 49.09 | 47.51 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 46.36 | 47.37 |
| Zm00001d041920_P001 | Maize | nucleus | 45.76 | 47.04 |
| EES15709 | Sorghum | nucleus | 49.7 | 46.99 |
| GSMUA_Achr10P... | Banana | nucleus | 44.55 | 46.96 |
| TraesCS4B01G113400.1 | Wheat | nucleus | 46.36 | 46.5 |
| TraesCS4D01G110900.1 | Wheat | nucleus | 46.36 | 46.36 |
| Os12t0162500-01 | Rice | plasma membrane | 46.06 | 46.34 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 46.36 | 46.22 |
| Zm00001d004857_P001 | Maize | nucleus | 48.79 | 46.0 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 46.06 | 45.78 |
| TraesCS5A01G124600.1 | Wheat | nucleus | 45.76 | 45.48 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 38.48 | 44.72 |
| GSMUA_Achr10P... | Banana | nucleus | 43.94 | 43.15 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 45.45 | 42.02 |
| Zm00001d023507_P001 | Maize | nucleus, plastid | 46.97 | 38.94 |
| KRH64202 | Soybean | nucleus | 31.82 | 35.47 |
| KRH17183 | Soybean | plastid | 38.48 | 35.08 |
| KRH72827 | Soybean | plastid | 37.88 | 34.34 |
| KRH53733 | Soybean | nucleus | 17.88 | 33.52 |
| KRH29611 | Soybean | nucleus | 37.58 | 32.21 |
| KRG98137 | Soybean | nucleus | 36.06 | 31.32 |
| KRH30482 | Soybean | nucleus | 36.06 | 30.91 |
| KRH24606 | Soybean | nucleus | 36.67 | 30.48 |
| KRH10117 | Soybean | nucleus | 38.79 | 30.48 |
| KRH23219 | Soybean | nucleus | 38.79 | 29.91 |
| KRH35159 | Soybean | nucleus | 27.27 | 28.39 |
| KRH27307 | Soybean | plastid | 20.91 | 24.21 |
| KRH22014 | Soybean | nucleus, plastid | 23.33 | 24.06 |
| KRH24356 | Soybean | nucleus | 36.97 | 22.26 |
| KRH22317 | Soybean | nucleus | 20.91 | 22.19 |
| KRH25692 | Soybean | nucleus, plastid | 21.82 | 21.82 |
| KRH55826 | Soybean | nucleus, plastid | 22.42 | 21.76 |
| KRH29330 | Soybean | nucleus | 36.67 | 21.72 |
| KRH27013 | Soybean | nucleus | 20.91 | 21.56 |
| KRH61066 | Soybean | nucleus, plastid | 33.33 | 21.44 |
| KRH05913 | Soybean | nucleus | 33.03 | 19.71 |
| KRH17396 | Soybean | nucleus | 33.03 | 19.5 |
| KRH59143 | Soybean | nucleus | 22.12 | 19.47 |
| KRH43037 | Soybean | nucleus | 21.82 | 19.15 |
| KRH51734 | Soybean | nucleus | 17.88 | 14.71 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EMBL:ACUP02000762 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G082800 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | UniProt:I1JDF7 | InterPro:IPR004827 | EnsemblPlants:KRH70316 | ProteinID:KRH70316 |
| ProteinID:KRH70316.1 | PFAM:PF00170 | PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0001B36D52 | InterPro:bZIP | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:+:7207110..7212719
Molecular Weight (calculated)
36078.4 Da
IEP (calculated)
7.102
GRAVY (calculated)
-0.752
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQKFIGKPP ATVDLDRMPE RGSHHRRSHS DTSFRFAANF DDLLLFDPSD FDISGLPSPL PLPSPVSAGL VPMSVDSDES GKQPRPAGAS AGGHLRSLSV
101: DSDFFDGLGF GGDERGAGKG GGGERRVGHH RHSNSMDGSS TTSFEADSAM IMDGVKKAMA PDKLAELALM DPKRAKRILA NRQSAARSKE RKIRYTSELE
201: RKVQTLQTEA TNLSAQLTML QRDTTDLTTE NKELKLRLEA LEQEAQLRED LNEALKEELQ RLRAQSTRLG AIGGNPSFGG IFNQLASQLA MQQLSNSAPH
301: QQTQHQPQVG MPPPPSGQNH PNFMDFNQQK
101: DSDFFDGLGF GGDERGAGKG GGGERRVGHH RHSNSMDGSS TTSFEADSAM IMDGVKKAMA PDKLAELALM DPKRAKRILA NRQSAARSKE RKIRYTSELE
201: RKVQTLQTEA TNLSAQLTML QRDTTDLTTE NKELKLRLEA LEQEAQLRED LNEALKEELQ RLRAQSTRLG AIGGNPSFGG IFNQLASQLA MQQLSNSAPH
301: QQTQHQPQVG MPPPPSGQNH PNFMDFNQQK
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.