Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G113400.1 | Wheat | nucleus | 98.48 | 98.78 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 98.79 | 98.49 |
| HORVU4Hr1G020540.1 | Barley | nucleus | 95.15 | 97.21 |
| TraesCS5D01G132300.1 | Wheat | nucleus | 79.7 | 79.22 |
| Zm00001d053162_P003 | Maize | nucleus | 80.3 | 78.4 |
| EES08023 | Sorghum | nucleus | 79.7 | 77.35 |
| Zm00001d004857_P001 | Maize | nucleus | 78.48 | 74.0 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 40.0 | 66.0 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 56.67 | 63.82 |
| GSMUA_Achr10P... | Banana | nucleus | 56.36 | 59.42 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 47.58 | 55.28 |
| Solyc06g060490.2.1 | Tomato | nucleus | 45.76 | 54.51 |
| CDY48943 | Canola | nucleus | 37.27 | 51.04 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 40.3 | 50.96 |
| GSMUA_Achr10P... | Banana | nucleus | 51.82 | 50.89 |
| PGSC0003DMT400045314 | Potato | nucleus | 49.09 | 49.69 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 39.09 | 49.05 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 50.91 | 48.0 |
| Bra032191.1-P | Field mustard | nucleus | 47.88 | 47.88 |
| CDY30752 | Canola | nucleus | 47.58 | 47.58 |
| PGSC0003DMT400002100 | Potato | nucleus | 48.18 | 46.76 |
| Solyc04g071160.2.1 | Tomato | nucleus | 48.18 | 46.63 |
| KRH70316 | Soybean | nucleus | 46.36 | 46.36 |
| CDX80722 | Canola | nucleus | 44.55 | 45.65 |
| CDY71925 | Canola | nucleus | 34.85 | 45.28 |
| AT1G43700.1 | Thale cress | nucleus | 46.06 | 44.57 |
| TraesCS4D01G316900.1 | Wheat | nucleus | 29.09 | 37.07 |
| TraesCS4D01G171700.2 | Wheat | nucleus | 37.58 | 34.83 |
| KRH08713 | Soybean | nucleus | 44.55 | 34.51 |
| TraesCS5D01G308600.1 | Wheat | nucleus | 38.79 | 34.04 |
| TraesCS7D01G268400.1 | Wheat | nucleus | 36.97 | 33.15 |
| TraesCS2D01G105400.1 | Wheat | nucleus | 35.15 | 31.52 |
| TraesCS1D01G191000.1 | Wheat | nucleus, plastid | 31.82 | 27.2 |
| TraesCS5D01G148700.1 | Wheat | nucleus | 19.09 | 26.36 |
| TraesCS3D01G293500.1 | Wheat | nucleus | 20.3 | 25.0 |
| TraesCS7D01G269300.1 | Wheat | nucleus | 34.24 | 23.89 |
| TraesCS3D01G148200.1 | Wheat | nucleus | 19.39 | 20.98 |
| TraesCS2D01G144300.1 | Wheat | nucleus | 19.09 | 20.59 |
| TraesCS5D01G315400.1 | Wheat | plastid | 25.45 | 17.99 |
| TraesCS4D01G105100.1 | Wheat | mitochondrion | 16.67 | 15.9 |
| TraesCS6D01G187300.1 | Wheat | nucleus | 13.33 | 13.62 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G110900.1 | EnsemblPlantsGene:TraesCS4D01G110900 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | ncoils:Coil | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 | PFAM:PF00170 | PFscan:PS50217 |
| SEG:seg | SMART:SM00338 | SUPFAM:SSF57959 | TIGR:cd14703 | MapMan:15.5.4.1 | : |
Description
No Description!
Coordinates
chr4D:-:91238750..91242174
Molecular Weight (calculated)
35311.1 Da
IEP (calculated)
6.929
GRAVY (calculated)
-0.792
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPRFPPPAP SSAGGAPRGH RRAHSETFIR FPDADLLLDP DSDFSFSDLD FPSLSDDSPA VSSDPTPPPP PLPPQQQGAA ASPSPAPRPP GGGGAHMRSL
101: SLDAAFFDGL ALQGGGGGGA GHKRSGSMDG ASSPSDGESA LSGGLPDYAK KAIPAERLAE LALLDPKRAK RILANRQSAA RSKERKIKYT GELERKVQTL
201: QTEATTLSAQ LTLLQRDTSG LTVENRELKL RLQSMEEQAK LRDALNDALR EEVQRLKIAA GQVPNMNGNP FGGGLQQHQQ QQQQIPNYFS QQQMHYQGHP
301: HHHPQNHSQN SSNGGQSLSG QSLSDSMDFM
101: SLDAAFFDGL ALQGGGGGGA GHKRSGSMDG ASSPSDGESA LSGGLPDYAK KAIPAERLAE LALLDPKRAK RILANRQSAA RSKERKIKYT GELERKVQTL
201: QTEATTLSAQ LTLLQRDTSG LTVENRELKL RLQSMEEQAK LRDALNDALR EEVQRLKIAA GQVPNMNGNP FGGGLQQHQQ QQQQIPNYFS QQQMHYQGHP
301: HHHPQNHSQN SSNGGQSLSG QSLSDSMDFM
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.