Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G020540.1 | |
| HORVU5Hr1G039870.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43700.1 | HORVU4Hr1G020540.1 | AT1G43700.1 | 15824315 |
| AT1G43700.1 | HORVU5Hr1G039870.5 | AT1G43700.1 | 15824315 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G110900.1 | Wheat | nucleus | 97.21 | 95.15 |
| TraesCS4B01G113400.1 | Wheat | nucleus | 96.59 | 94.83 |
| TraesCS4A01G209900.1 | Wheat | nucleus | 96.59 | 94.26 |
| Zm00001d053162_P003 | Maize | nucleus | 81.11 | 77.51 |
| EES08023 | Sorghum | nucleus | 80.5 | 76.47 |
| Zm00001d004857_P001 | Maize | nucleus | 78.95 | 72.86 |
| HORVU5Hr1G039870.5 | Barley | nucleus, plastid | 78.02 | 70.59 |
| GSMUA_Achr3P19170_001 | Banana | nucleus | 40.25 | 65.0 |
| GSMUA_Achr6P18130_001 | Banana | nucleus | 57.89 | 63.82 |
| GSMUA_Achr10P... | Banana | nucleus | 56.66 | 58.47 |
| HORVU3Hr1G109890.1 | Barley | cytosol | 11.15 | 58.06 |
| GSMUA_Achr6P13040_001 | Banana | nucleus | 49.23 | 55.99 |
| Solyc06g060490.2.1 | Tomato | nucleus | 46.75 | 54.51 |
| PGSC0003DMT400074878 | Potato | mitochondrion, nucleus | 41.49 | 51.34 |
| CDY48943 | Canola | nucleus | 38.08 | 51.04 |
| GSMUA_Achr10P... | Banana | nucleus | 52.01 | 50.0 |
| PGSC0003DMT400045314 | Potato | nucleus | 50.46 | 50.0 |
| Bra034916.1-P | Field mustard | nucleus, plastid | 39.94 | 49.05 |
| Bra032191.1-P | Field mustard | nucleus | 48.92 | 47.88 |
| VIT_18s0076g00330.t01 | Wine grape | nucleus | 51.7 | 47.71 |
| CDY30752 | Canola | nucleus | 48.61 | 47.58 |
| PGSC0003DMT400002100 | Potato | nucleus | 49.54 | 47.06 |
| Solyc04g071160.2.1 | Tomato | nucleus | 49.54 | 46.92 |
| KRH70316 | Soybean | nucleus | 47.37 | 46.36 |
| CDX80722 | Canola | nucleus | 45.51 | 45.65 |
| CDY71925 | Canola | nucleus | 35.6 | 45.28 |
| AT1G43700.1 | Thale cress | nucleus | 47.06 | 44.57 |
| KRH08713 | Soybean | nucleus | 45.51 | 34.51 |
| HORVU4Hr1G050190.1 | Barley | nucleus | 37.77 | 34.37 |
| HORVU7Hr1G056230.2 | Barley | nucleus | 38.39 | 33.97 |
| HORVU2Hr1G085560.4 | Barley | nucleus, plastid | 39.94 | 33.42 |
| HORVU5Hr1G079160.11 | Barley | vacuole | 40.87 | 29.66 |
| HORVU4Hr1G083000.1 | Barley | nucleus | 32.82 | 27.18 |
| HORVU2Hr1G017820.1 | Barley | nucleus | 30.03 | 26.5 |
| HORVU5Hr1G045690.1 | Barley | nucleus | 19.2 | 25.83 |
| HORVU4Hr1G053410.2 | Barley | cytosol | 29.72 | 25.26 |
| HORVU3Hr1G072770.1 | Barley | nucleus | 20.43 | 24.81 |
| HORVU7Hr1G056490.1 | Barley | nucleus, plastid | 35.29 | 22.09 |
| HORVU3Hr1G040920.8 | Barley | nucleus | 17.96 | 18.53 |
| HORVU5Hr1G080140.1 | Barley | nucleus, plastid | 25.7 | 18.0 |
| HORVU1Hr1G049310.2 | Barley | nucleus | 23.22 | 17.48 |
| HORVU5Hr1G031130.2 | Barley | mitochondrion | 19.2 | 17.22 |
| HORVU6Hr1G051110.4 | Barley | nucleus | 13.93 | 13.98 |
| HORVU4Hr1G016340.4 | Barley | nucleus, plastid | 17.03 | 13.35 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EMBL:AK365082 | EMBL:AK368441 | ncoils:Coil | UniProt:F2DMG4 |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU4Hr1G020540 | EnsemblPlants:HORVU4Hr1G020540.1 | InterPro:IPR004827 | PFAM:PF00170 |
| PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF86 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0002006941 |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DMG4]
Coordinates
chrchr4H:+:101719676..101724007
Molecular Weight (calculated)
34756.5 Da
IEP (calculated)
6.979
GRAVY (calculated)
-0.798
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPRFPPPAP SSAGGAPRGH RRAHSETFIR FPDADLLLDP DSDFSFSDLD FPSLSDDSPA VSSDPTPPPP PLPPHQSPSP APRPPGAGGA HMRSLSLDAA
101: FFDGLALQGG GGGGAGHKRS GSMDGASSPS DGESALSGGL PDYAKKAIPA ERLAELALLD PKRAKRILAN RQSAARSKER KIKYTGELER KVQTLQTEAT
201: TLSAQLTLLQ RDTSGLTVEN RELKLRLQSM EEQAKLRDAL NDALREEVQR LKIAAGQVPS MNGHPFGGGL QQQQQQMQNY FSQQQQMHYQ GHQHHHPQNH
301: PQNSSNGGQS LSGQSLSDSM DFM
101: FFDGLALQGG GGGGAGHKRS GSMDGASSPS DGESALSGGL PDYAKKAIPA ERLAELALLD PKRAKRILAN RQSAARSKER KIKYTGELER KVQTLQTEAT
201: TLSAQLTLLQ RDTSGLTVEN RELKLRLQSM EEQAKLRDAL NDALREEVQR LKIAAGQVPS MNGHPFGGGL QQQQQQMQNY FSQQQQMHYQ GHQHHHPQNH
301: PQNSSNGGQS LSGQSLSDSM DFM
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
Arabidopsis Description
VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.