CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES08023
EES15709

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43700.1	EES08023	AT1G43700.1	15824315
AT1G43700.1	EES15709	AT1G43700.1	15824315

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053162_P003	Maize	nucleus	90.29	90.83
Zm00001d004857_P001	Maize	nucleus	89.12	86.57
HORVU4Hr1G020540.1	Barley	nucleus	76.47	80.5
TraesCS4D01G110900.1	Wheat	nucleus	77.35	79.7
TraesCS5B01G124200.1	Wheat	nucleus	65.59	79.64
TraesCS4B01G113400.1	Wheat	nucleus	76.47	79.03
TraesCS4A01G209900.1	Wheat	nucleus	76.47	78.55
EES15709	Sorghum	nucleus	77.94	75.93
TraesCS5A01G124600.1	Wheat	nucleus	73.24	75.0
TraesCS5D01G132300.1	Wheat	nucleus	72.94	74.7
GSMUA_Achr3P19170_001	Banana	nucleus	40.0	68.0
HORVU5Hr1G039870.5	Barley	nucleus, plastid	70.88	67.51
GSMUA_Achr6P18130_001	Banana	nucleus	57.06	66.21
GSMUA_Achr10P...	Banana	nucleus	58.24	63.26
GSMUA_Achr6P13040_001	Banana	nucleus	49.12	58.8
Solyc06g060490.2.1	Tomato	nucleus	46.18	56.68
PGSC0003DMT400074878	Potato	mitochondrion, nucleus	42.06	54.79
GSMUA_Achr10P...	Banana	nucleus	52.06	52.68
PGSC0003DMT400045314	Potato	nucleus	50.0	52.15
CDY48943	Canola	nucleus	35.88	50.62
Solyc04g071160.2.1	Tomato	nucleus	50.29	50.15
VIT_18s0076g00330.t01	Wine grape	nucleus	51.47	50.0
PGSC0003DMT400002100	Potato	nucleus	49.71	49.71
Bra034916.1-P	Field mustard	nucleus, plastid	38.24	49.43
KRH70316	Soybean	nucleus	47.94	49.39
Bra032191.1-P	Field mustard	nucleus	46.76	48.18
CDY30752	Canola	nucleus	46.76	48.18
CDX80722	Canola	nucleus	44.12	46.58
AT1G43700.1	Thale cress	nucleus	46.18	46.04
CDY71925	Canola	nucleus	33.24	44.49
KRH08713	Soybean	nucleus	45.59	36.38
EER99183	Sorghum	nucleus	41.47	35.97
OQU92641	Sorghum	nucleus	36.47	35.53
EES12438	Sorghum	nucleus	39.12	35.19
OQU92255	Sorghum	nucleus	30.59	34.1
OQU90478	Sorghum	nucleus	36.47	32.8
EES14151	Sorghum	nucleus	35.59	31.68
KXG40277	Sorghum	nucleus	35.0	27.61
EES04836	Sorghum	nucleus	19.41	25.48
EES01493	Sorghum	nucleus	20.29	25.0
EES15257	Sorghum	nucleus	35.88	24.8
OQU89248	Sorghum	nucleus	15.29	21.58
EER97061	Sorghum	nucleus	31.47	21.4
KXG23197	Sorghum	mitochondrion	17.65	16.62
EES00074	Sorghum	nucleus, plastid	20.0	16.5
KXG28232	Sorghum	mitochondrion	17.35	16.48
EES06922	Sorghum	nucleus	14.71	15.48
OQU83785	Sorghum	plastid	19.12	10.06
OQU83493	Sorghum	nucleus	19.12	8.51

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8070663	UniProt:C5Y559	ncoils:Coil	EnsemblPlants:EES08023
ProteinID:EES08023	ProteinID:EES08023.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF86	SMART:SM00338	EnsemblPlantsGene:SORBI_3005G046100
SUPFAM:SSF57959	unigene:Sbi.15314	UniParc:UPI0001A86296	RefSeq:XP_002449035.1	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:4372072..4376291

Molecular Weight (calculated)

36573.5 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.787

Length

340 amino acids

Sequence
(BLAST)

001: MDPRFPPPAP SSCFGGGGGL LPARGHHRRA HSETFIRLPD DDLLLDADAD FGFSDIDFPS LSDDSPAASD PTPQPQPQAP PPQQPMPQQQ AASSAPPRPP
101: SGAHMRSLSL DAAFFDSLSL QGGGGGGGGG GVVGHKRSGS MDGSSSSFEG ESAPSSSVFP DYAKKAVPDD KLAELALLDP KRAKRILANR QSAARSKERK
201: IKYTSELERK VQTLQTEATT LSAQLTLLQR DTSGLTTENR ELKLRLQAME EQAKLRDALN DALREEVQRL KIAVGQVPNM NGNPFNGGLP QQQQMPSYFS
301: QQQQMQYFGS HQGQHHNPNH HPQNSSNGGG QSLSDSMDFM

Best Arabidopsis Sequence Match ( AT1G43700.1 )
(BLAST)

001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G

Arabidopsis Description

VIP1Transcription factor VIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.