Factsheet for TraesCS4D01G171700.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G169600.1	Wheat	nucleus	99.44	99.44
TraesCS4A01G135600.2	Wheat	nucleus	98.88	98.88
HORVU4Hr1G050190.1	Barley	nucleus	97.75	98.03
Os03t0336200-02	Rice	nucleus	77.81	84.19
OQU92641	Sorghum	nucleus	79.78	81.38
Zm00001d029064_P001	Maize	nucleus	77.81	80.06
Zm00001d047519_P001	Maize	nucleus	78.65	79.32
GSMUA_Achr2P18830_001	Banana	nucleus	53.37	65.97
TraesCS2D01G105400.1	Wheat	nucleus	65.73	63.59
GSMUA_Achr6P32530_001	Banana	nucleus	50.28	56.11
Bra000195.1-P	Field mustard	nucleus	40.45	43.11
TraesCS4D01G110900.1	Wheat	nucleus	34.83	37.58
TraesCS4D01G316900.1	Wheat	nucleus	26.69	36.68
TraesCS5D01G132300.1	Wheat	nucleus	33.99	36.45
TraesCS5D01G308600.1	Wheat	nucleus	37.64	35.64
TraesCS7D01G268400.1	Wheat	nucleus	35.96	34.78
TraesCS1D01G191000.1	Wheat	nucleus, plastid	31.74	29.27
TraesCS5D01G148700.1	Wheat	nucleus	18.82	28.03
TraesCS3D01G293500.1	Wheat	nucleus	20.79	27.61
CDY13830	Canola	nucleus, plastid	23.31	27.04
TraesCS7D01G269300.1	Wheat	nucleus	34.55	26.0
KRH35159	Soybean	nucleus	22.75	25.55
TraesCS3D01G148200.1	Wheat	nucleus	21.07	24.59
TraesCS2D01G144300.1	Wheat	nucleus	20.79	24.18
TraesCS5D01G315400.1	Wheat	plastid	24.72	18.84
CDY13829	Canola	cytosol	0.56	18.18
TraesCS4D01G105100.1	Wheat	mitochondrion	16.01	16.47
TraesCS6D01G187300.1	Wheat	nucleus	13.76	15.17

Protein Annotations

EnsemblPlants:TraesCS4D01G171700.2	EnsemblPlantsGene:TraesCS4D01G171700	Gene3D:1.20.5.170	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
InterPro:bZIP	ncoils:Coil	PANTHER:PTHR13690	PANTHER:PTHR13690:SF84	PFAM:PF00170	PFscan:PS50217
SEG:seg	SMART:SM00338	SUPFAM:SSF57959	TIGR:cd14703	MapMan:15.5.4.1	:

Description

No Description!

Coordinates

chr4D:-:298538668..298542384

Molecular Weight (calculated)

38406.7 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.695

Length

356 amino acids

Sequence
(BLAST)

001: MQQPKPADPP GRPFPPPSPS MAAAATAMRG AHHRRARSEV AFRLPDDLDI GGGADGDGSA GFDEIGSEDD LFSTFMDIEK ISSGPAAGSD RDRDRAAETS
101: SPPRPKHRYS SSVDGSGLFS AAGSAARRDA GAAQALADVL EAKKAMSPEQ LAELAAIDPK RAKRILANRQ SAARSKERKA RYMTELERKV QTLQTEATTL
201: SAQLTLFQRD TTGLSSENAE LKIRLQAMEQ QAQLRDALND ALKQEVERLK MATGEMSNSS DAYSVGLQHV LYNSSFFPQS QQNTAQHQGG ARFPPPFHPP
301: HPNVPNHQML SHPNTLSDIM QQDHLARLQG LDISKGHPVV KSESSSISAS ESSSTF

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.