Factsheet for GSMUA_Achr3P19190_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P08230_001
GSMUA_Achr8P07870_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04840.1	GSMUA_Achr8P07870_001	AT1G76920.1	21798944
AT5G04840.1	GSMUA_Achr10P...	AT3G15000.1	21798944
AT5G04840.1	GSMUA_Achr6P08230_001	AT3G15000.1	21798944
AT5G04840.1	GSMUA_AchrUn_...	AT3G15000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	62.17	64.83
GSMUA_Achr5P17400_001	Banana	nucleus	67.74	59.69
Os02t0538900-01	Rice	mitochondrion, nucleus	50.15	52.45
TraesCS6D01G187300.1	Wheat	nucleus	48.39	51.08
TraesCS6A01G203200.1	Wheat	nucleus	48.39	51.08
HORVU6Hr1G051110.4	Barley	nucleus	47.8	50.62
EES06922	Sorghum	nucleus	47.8	50.46
TraesCS6B01G222800.1	Wheat	nucleus	47.8	50.46
Zm00001d016732_P003	Maize	nucleus	46.33	49.38
Zm00001d050669_P001	Maize	nucleus	46.04	48.76
VIT_13s0073g00430.t01	Wine grape	nucleus	38.12	42.21
PGSC0003DMT400005064	Potato	nucleus	34.9	38.89
Solyc11g006490.1.1	Tomato	nucleus	34.31	38.11
AT5G04840.1	Thale cress	plastid	34.02	37.78
Bra009426.1-P	Field mustard	mitochondrion, nucleus	33.72	37.46
CDX70198	Canola	mitochondrion, nucleus	33.72	37.46
CDY44883	Canola	mitochondrion, nucleus	32.84	36.6
GSMUA_Achr9P06540_001	Banana	nucleus	20.23	28.28
GSMUA_Achr6P26930_001	Banana	nucleus	20.82	28.06
GSMUA_Achr3P03550_001	Banana	nucleus	18.77	27.59
GSMUA_Achr3P31390_001	Banana	nucleus	17.3	26.46
GSMUA_Achr7P25310_001	Banana	nucleus	21.41	26.45
GSMUA_Achr9P00300_001	Banana	nucleus	26.39	23.94
GSMUA_Achr8P29390_001	Banana	nucleus	25.22	23.5
GSMUA_Achr4P10560_001	Banana	nucleus	18.48	23.25
GSMUA_Achr3P02820_001	Banana	golgi	25.81	21.95
GSMUA_Achr3P19170_001	Banana	nucleus	10.26	17.5
GSMUA_Achr6P13040_001	Banana	nucleus	12.9	15.49
GSMUA_Achr11P...	Banana	nucleus	13.2	14.42
GSMUA_Achr6P32530_001	Banana	nucleus	13.49	14.42
GSMUA_Achr5P25700_001	Banana	nucleus	14.66	14.08
GSMUA_Achr6P18130_001	Banana	nucleus	12.02	13.99
GSMUA_Achr10P...	Banana	nucleus	12.32	13.42
GSMUA_Achr11P...	Banana	nucleus	14.66	13.37
GSMUA_Achr2P18830_001	Banana	nucleus	10.85	12.85
GSMUA_Achr10P...	Banana	nucleus	12.32	12.5
GSMUA_AchrUn_...	Banana	nucleus	14.37	12.28
GSMUA_AchrUn_...	Banana	nucleus	11.73	11.56
GSMUA_Achr5P29650_001	Banana	nucleus	12.9	11.55
GSMUA_Achr1P08090_001	Banana	nucleus, plastid	15.25	11.16
GSMUA_Achr5P20200_001	Banana	nucleus	9.09	11.15
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	13.78	11.08
GSMUA_Achr11P...	Banana	nucleus	14.37	10.94
GSMUA_Achr8P12090_001	Banana	nucleus	14.37	10.36
GSMUA_Achr3P12290_001	Banana	nucleus	14.96	10.2

Protein Annotations

EnsemblPlants:GSMUA_Achr3P19190_001	EnsemblPlants:GSMUA_Achr3T19190_001	EnsemblPlantsGene:GSMUA_Achr3G19190_001	Gene3D:1.20.5.170	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	InterPro:bZIP	ncoils:Coil	PANTHER:PTHR22952	PANTHER:PTHR22952:SF251	SEG:seg
SMART:SM00338	UniParc:UPI0002965064	UniProt:M0SFY5	MapMan:15.5.4.1	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G19190_001]

Coordinates

chr3:+:20552477..20556429

Molecular Weight (calculated)

37924.8 Da

IEP (calculated)

7.285

GRAVY (calculated)

-0.621

Length

341 amino acids

Sequence
(BLAST)

001: MSRPAPLPPR CPFQNRGVTR RALESKPQTT QTDDKLCAKH HRFPSHGSLL DEQPLWLDDL LTDPEISPRG ISLQRSSSDP VALLEVATSF HGPISPITEE
101: DALSDGILHE SRESEEASEI GYGFEVGNCV YGPNSPRKKT KMDDLESSVV TALLKDVPSN PLQYLTVDYP STSVINELNE KEDSTSSGNL DSESISRRRS
201: GQRSRVRKLQ YIAELERSVD ILQTLGADLA ARVASLFQYR LALSVENKKL RQQLASLQQE KIIKHGQHQS LKNEAERLRM IYGRHRRSKS AASCFGTSPS
301: VVVVDPSPID WQTLDLGKLS LGGNQVSMKH GLARETNRDM T

Best Arabidopsis Sequence Match ( AT5G04840.1 )
(BLAST)

001: MSRPAPLPPR CPIPKKLSLS PVADTFYSSS SPIESYIGQY KSSTQDSRLE DQPAWLDELL CDKTDGLLTR GGPLRRSASD SVVLLGDISA TFSGFDQSED
101: EESLSSEACG DLESACVYGP NSPRAKNNSS FSNNPIASAF SDYGSQTPPQ NLDDTVKGIN RSPVAENACG SMGIPNAKRN PGQRSRVRKL QYIAELERTV
201: GMLQTVEADL SVRVASLLQT RATLSLENSQ LKQQMAILKQ DKLIREGEYQ LLKKEAQRLK SGLGYLGSTN NSNRLVRSYS AGSNVAPRTA SSHLDWNLLD
301: LTKLNLN

Arabidopsis Description

At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.